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Unigene SGN-U207333

Unigene Basic Information

Unigene ID:	SGN-U207333
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207333
mRNA sequence:	Length: 254 bp

>SGN-U207333 Solanum melongena #2 (1 members)
TTTGCACTCAACACGCAACAACAAAAATGCCTCAAAGGCACTCATTGCTGCTGAGTATACAGGGGTTAAGGTTGAACTTGTAAAGGACTT
CCAGATGGGCGTATCGAACAAGACACCTGAGTTTCTTAAGATGAATCCAATTGGAAAGGTTCCTGTGCTTGAAACACCAGATGGTGCTGT
TTTTGAGAGCAATGCGATTGCACGCTATGTTACCAAAACGAAGCCCAACAATCCTCTTTTTGGTTCTTCATTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518138
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|13626515\|sp\|Q9ZRI7\|EF1G_ORYSA	140.6	5.3e-33	80.95	252 bp (99.2%)	2
Description:	gi\|13626515\|sp\|Q9ZRI7\|EF1G_ORYSA Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) gi\|38687…
arabidopsis	blastx	At1g09640.1	122.9	2.9e-29	70.24	252 bp (99.2%)	2
Description:	At1g09640.1 68408.m00971 elongation factor 1B-gamma, putative (eEF-1B gamma) Similar to elongat…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209803 (84 Aa)

LHSTRNNKNASKALIAAEYTGVKVELVKDFQMGVSNKTPEFLKMNPIGKVPVLETPDGAVFESNAIARYVTKTKPNNPLFGSSL

SignalP predicts non-secretion with a score of 0.047

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30850 (85 Aa)

LHSTRNNKNASKALIAAEYTGVKVELVKDFQMGVSNKTPEFLKMNPIGKVPVLETPDGAVFESNAIARYVTKTKPNNPLFGSSLX

SignalP predicts non-secretion with a score of 0.047

IPR004045 Glutathione S-transferase, N-terminal

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	29	Mal_ac_isom	300
2	22504	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	27
5	57022	EF1_G GST_Cterm Mal_ac_isom GST_Nterm	18
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119155	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19
5	129505	Elongation factor 1 gamma chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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