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Unigene SGN-U210605

Unigene Basic Information

Unigene ID:	SGN-U210605
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	210605
mRNA sequence:	Length: 215 bp

>SGN-U210605 Petunia hybrida #1 (1 members)
GCTGACTTCAAAGAAGCCAAAAATCAGGTTGCAGCTAGCTTTGCAGCTGGAGGATCCATAATGAGTGAGCTAAAGCAATGGAATGAATTA
TATGGGGAAGGAGGATCAAGGAAAAAGGAACAGTTATCCTATTTCTTGTAGGATAGGTATGTCGTCTTCCTGCACCCTTCTCGACCATCC
ATAGAAGTTGGGCGTCTCAGAAATTTAAGATGCTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E533505
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30696968\|ref\|NP_849842.1\|	83.19	1.1e-15	88.89	135 bp (62.8%)	1
Description:	AAA-type ATPase family protein [Arabidopsis thaliana]
arabidopsis	blastx	At1g64110.2	83.19	2.6e-17	88.89	135 bp (62.8%)	1
Description:	At1g64110.2 68408.m06656 expressed protein similar to hypothetical protein GB:AAF24564 GI:66920…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P205961 (53 Aa)

DAQLLWMVEKGAGRRHTYPTRNRITVPFSLILLPHIIHSIALAHSLWILQLQS

SignalP predicts non-secretion with a score of 0.279

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P43257 (71 Aa)

ADFKEAKNQVAASFAAGGSIMSELNNGMNYMGKEDQGKRNSYPISCRIGIRLPAPFSTIHRSWASQKFKML

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	40148		1
5	78247		1
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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