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Unigene SGN-U212446

Unigene Basic Information

Unigene ID:	SGN-U212446
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	212446
mRNA sequence:	Length: 214 bp

>SGN-U212446 Petunia hybrida #1 (1 members)
TGTTTGCTGGAGAGGAGACAATTGATTCGTTGAGGAAGCATGCCAAATACCAGAGACGAATGTTTGACCAAGCTGTTCAGCTTGTACGCC
CAGGCGGAGTTCTTGTCTATTCCACATGTACGATAAACCCTGGTGAGAATGAAGCGCTGGTTCGATATGCATTGGACACATATGAGTTTC
TGTCGTTGGCATCACAGCATCCAAGAGTAGGAGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	Petunia-YF	whole fruit (ovary) several	947	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E536945
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|38636850\|dbj\|BAD03090.1\|	126.7	9e-29	84.29	210 bp (98.1%)	3
Description:	gi\|38636850\|dbj\|BAD03090.1\| putative nucleolar protein [Oryza sativa (japonica cultivar-group)]
arabidopsis	blastx	At1g06560.1	113.2	2.4e-26	77.14	210 bp (98.1%)	3
Description:	At1g06560.1 68408.m00631 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P207848 (71 Aa)

FAGEETIDSLRKHAKYQRRMFDQAVQLVRPGGVLVYSTCTINPGENEALVRYALDTYEFLSLASQHPRVGG

SignalP predicts non-secretion with a score of 0.054

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P207849 (71 Aa)

LLLLDAVMPTTETHMCPMHIEPALHSHQGLSYMWNRQELRLGVQAEQLGQTFVSGIWHASSTNQLSPLQQT

SignalP predicts non-secretion with a score of 0.243

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P45007 (71 Aa)

FAGEETIDSLRKHAKYQRRMFDQAVQLVRPGGVLVYSTCTINPGENEALVRYALDTYEFLSLASQHPRVGG

SignalP predicts non-secretion with a score of 0.054

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	412	Sun_Nop1/Nop2 Sun	42
2	24614	BPD_transp Sun_Nop1/Nop2 Sun PUA	8
5	64946	BPD_transp Sun_Nop1/Nop2 Sun PUA	2
1.1	101382	Armadillo-like helical - Molecular Function: binding (GO:0005488)	408
2	122938	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p PUA - Molecular Function: RNA binding (GO:0003723)	4
5	136552	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p PUA - Molecular Function: RNA binding (GO:0003723)	2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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