Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U579609, SGN-U581242, SGN-U581567, and SGN-U590142 in the current build, Tomato 200607 #2

Unigene SGN-U212905

Unigene Basic Information

Unigene ID:	SGN-U212905
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212905
mRNA sequence:	Length: 1441 bp

>SGN-U212905 Lycopersicon Combined #3 (94 members)
TTTTTTTTTTTTTTTTGGATCGATAAATGCAAAATCAAACTAGTACTATTACTTACTCAAACACACATTCAATTCTTCGATGAGGCAACA
ATGGAGGGAAAAAAAGGGAAGAAGCAAAAGCTGTGTCAGCTAATTGCTCTTCACCTGGTACAGATTTGCCCATTTAAGAACCACAACAAG
CTTAAAAGACTATACTTTCTCCTGCAATTTACATCCAAAATTTTGCTCCAACTTCAAAGAGAATTGAAATTGGGAAATCTGATATGTCTG
GGAAGATTATGCATGCTGTTCAATACCACTCTTATGGCGGTGGAGCTGCTGCCTTGAAGCATGTGGAAGTTCCTGTCCCTACTCCAAATA
AGGATGAAGTCTTGGTAAAAATGGAGGCTACAAGCATAAATCCTCTTGACTCGAAAATTCAGAAGGGCATGCTTCGTCCATTTCTTCCTT
CCAAGTTTCCTTTTATTCCTACTACCGACGTGGCGGGAGAGGTTGTTGAGGTAGGATCTAATGTAAAAAGTTTCAAGGCTGGTGACAAGG
TTGTGGCTATGCTCAGTACCAAGAGTGGAGGTGGATTGGCTGAATATGCGGTACCTAAGGAGAGTTTGACTGTTTCAAGACCCGCTGAAG
TATCAGCTGCAGAAGGTGCAGGTCTTGTTATTGCAGGTCTTACAGCTCTTCAGGCCCTCGTCAATCCTGCTGAGGTTAAGCTTGATGGAA
CTGGACCCCGGAAGAACATTCTAGTTACGGCTGCTTCGGGTGGTGTAGGTCACTATGCTGTTCAATTGGCAAAACTTGGTAACGCCCATG
TTACTGCCACCTGTGGAGCCCGCAACATTGATTTTGTGAAGAGCTTAGGAGCAGATGAGATTCTTGATTACAAGACTCCAGAGGGAGCTA
CTCTTAAGAGTCCATCAGGCCAAAAATATGATGCAGTGATTAACTGCACAACAGGCATCCCTTGGTCTACCTTTGAGCCTAATTTAAGTT
CAAGTGGAAAGGTGATCGATCTAACTCCTGGAGCTAGCTCCATGTTGACCTTTGCAGTAAAGAAATTAACCTTCTCAAAGAAGCAGTTGG
TGCCGTTTCTTGTAAATGCCAATAAGGAAAACCTGGAATTGCTTGTTAAGCTTGTGAAGGAAGGGAAGCTCAAAACAGTGATTGACTCCA
AATTTCCTCTGAGCAAGGCTGAAGATGCTTGGAGCAGGAGTATCGACGGACATGCGACAGGAAAGATTTTGGTGGAGCCATAAAGTAGTG
ATCTACCATATTATGTTATTATACATACGTGTGTTATAAAAGATTTGTGAGGCTTGTGCATTATGACCAGTTAAATCTATTCAGCTGCAA
CAACTTTTATTTGTCTTGTATGCATATGCAGCTTGTCAACTGTTTTTTATTTTTATTTTCATAATGCTGTTCGATTAAGTTAAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	19
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	26
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	7
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	7
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (94)

Alignment image suppressed for unigene with 94 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	115	Adh_zn_family	112
2	22527	Tdh Adh_zn_family BchB	26
5	57168	Tdh Adh_zn_family BchB	16

Preceding Unigenes (1)

Unigene	Build
SGN-U143226	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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