Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U583189 and SGN-U583190 in the current build, Tomato 200607 #2

Unigene SGN-U213093

Unigene Basic Information

Unigene ID:	SGN-U213093
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213093
mRNA sequence:	Length: 2935 bp

>SGN-U213093 Lycopersicon Combined #3 (101 members)
AGAGAAGACCTCGCCGCCTCCTTCTCTCTGCACTGAACAAGACGAATTTGTAGTTACATTGACAGCCATTCAAGATGGTGAAGTTCACAG
CTGAAGAGCTTAGAAGGATTATGGACTTCAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTGGACCATGGAAAATCTACCCTTA
CTGATTCTCTGGTGGCGGCTGCTGGTATCATTGCTCAGGAAGTTGCAGGTGATGTCAGAATGACAGATACACGTGCAGATGAGGCTGAGC
GTGGTATCACCATCAAGTCCACTGGTATTTCACTTTACTACGAGATGACTGATGACTCCTTGAGGAACTTCAAGGGAGAGAGAAATGGGA
ACGAGTACCTCATCAACCTCATCGATTCACCTGGGCACGTTGACTTCTCATCTGAAGTGACTGCTGCTCTTCGTATTACTGATGGTGCAC
TTGTGGTGGTTGATTGTGTGGAAGGTGTCTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCCCTTGGTGAAAGGATTCGTCCTGTCTTGA
CAGTTAACAAGATGGACAGGTGTTTCCTCGAGCTTCAGGTTGATGGAGAGGAGGCCTATCAGACATTCCAAAGAGTTATTGAGAATGCTA
ATGTTATCATGGCTACATATGAGGATCCCCTTCTTGGTGATGTCCAGGTTTATCCTGAGAAAGGTACCGTTGCTTTCTCAGCTGGGTTGC
ATGGGTGGGCTTTCACTCTCACCAATTTTGCCAAGATGTATGCTTCCAAATTTGGTGTTGATGAGTCTAAGATGATGGAGAGGCTGTGGG
GTGAGAACTTTTTTGACCCTGCCACCAAAAAGTGGACCACAAAAAACACCGGGACAGCTTCGTGCAAGCGTGGGTTTGTTCAATTCTGCT
ATGAGCCAATTAAGCAGATTATCAACACTTGCATGAACGATCAGAAAGATAAGCTCTGGCCTATGTTGCAGAAGCTTGGTGTAACCATGA
AATCTGATGAAAAAGATTTGATGGGCAAGGCACTGATGAAGCGTGTGATGCAGACCTGGCTTCCCGCAAGTACTGCTCTTCTTGAAATGA
TGATATATCATCTCCCATCACCGTCCACAGCTCAAAAATACCGTGTGGAGAACTTGTATGAGGGACCCCTTGATGATGCTTATGCTAATG
CTATCAGGAACTGTGACCCAGAAGGGCCGCTTATGCTTTATGTATCAAAGATGATTCCAGCATCTGACAAGGGTAGATTCTTTGCTTTTG
GTCGTGTATTTGCTGGGAAGGTTTCTACTGGTATGAAGGTTAGAATCATGGGTCCTAACTATGTTCCTGGTGAAAAGAAGGATTTATATG
TCAAGAATATCCAGCGAACTGTTATTTGGATGGGTAAGAGGCAAGAAACTGTTGAGGATGTTCCCTGTGGTAACACTGTTGCCATGGTTG
GTTTGGATCAGTTTATTACCAAGAATGCAACATTGACCAATGAAAAGGAAGTCGATGCTCACCCTATCAGAGCAATGAAGTTTTCTGTCT
CACCAGTTGTGCGTGTAGCTGTTCAGTGCAAGGTCGCATCTGACCTTCCCAAGCTTGTTGAAGGGTTGAAACGTCTGGCTAAGTCTGATC
CTATGGTTGTTTGTTCTATTGAAGAGTCTGGAGAGCATATTATTGCTGGTGCTGGAGAACTCCACCTTGAGATCTGTCTGAAGGATTTGC
AGGATGACTTTATGGGCGGTGCTGAAATTATAAAATCTGATCCCGTTGTGTCCTTCCGTGAGACGGTCCTCGAGAAGTCTACTCGAACTG
TGATGAGCAAGTCCCCTAACAAGCATAACCGTTTGTACATGGAGGCTAGACCAATGGAGGAAGGGCTTGCTGAGGCTATTGACGAGGGAC
GCATTGGCCCTAGGGATGACCCTAAGGTTCGTTCCAAGATCTTGGCTGAGGAGTTTGGCTGGGACAAAGATCTTGCAAAGAAGATTTGGT
GCTTTGGTCCTGAGACAACTGGTCCCAACATGGTGGTGGATATGTGTAAGGGAGTTCAGTACCTGAATGAAATTAAGGATTCTGTTGTTG
CTGGTTTCCAGTGGGCTTCGAAGGAAGGTGCATTGGCTGAAGAGAACATGAGAGGTATTTGCTTTGAAGTCTGTGATGTTGTTCTTCATT
CTGATGCTATTCACAGGGGTGGTGGCCAAGTTATTCCCACTGCTAGGAGGGTTATCTATGCTTCTCAGCTTACTGCTAAACCCCGCCTGT
TGGAGCCCGTTTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCCCTTGGTGGTATCTATAGTGTTCTGAATCAGAAGCGTGGACACGTGT
TTGAGGAGATGCAGAGGCCAGGAACTCCTCTTTACAACATCAAGGCTTACCTTCCTGTTGTTGAGTCTTTTGGATTTTCAGGTACCTTGA
GAGCTGCTACTTCAGGTCAAGCCTTCCCACAGTGTGTGTTTGATCATTGGGAAATGATGTCCTCTGACCCATTGGAAGCTGGCTCACAAG
CTCATCAACTCGTCCTTGATATCCGCAAGAGGAAGGGTTTGAAGGATCAGATGACCCCTCTATCCGAGTTTGAGGACAAGCTGTAAGCTT
GTGGAAGTTTCAACTTGGCAGAGGTTTTTGATGGACACTTTTGCTTAATTGGATCTGCAGAAGTTTTGTTTTACATTTATATGTGTTTTA
GCAGTTAGTTTTACCATTTTCATGTAGGAGTTTGAACCGTAAGTGAGCTATTTTGTTACTTTCTTTTATGTCATTTACAGAGACAAAAAT
CTTGCCCTTTGTGTTTTCTTAAGTGTTTCTCTTAAAAAAAAAAAACGCTTTTGTCCTTTCCGGGAACCCCCCCAAATGTTTTCAAACTTT
TCACGTGTATTCAAGTGTGTTGATGTTACATCGTCTGTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	15
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	20
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (101)

Alignment image suppressed for unigene with 101 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22401	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	31
5	56963	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	19

Preceding Unigenes (1)

Unigene	Build
SGN-U143681	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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