Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U578003 and SGN-U580472 in the current build, Tomato 200607 #2

Unigene SGN-U213704

Unigene Basic Information

Unigene ID:	SGN-U213704
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213704
mRNA sequence:	Length: 1026 bp

>SGN-U213704 Lycopersicon Combined #3 (55 members)
ACAAATAGAAAAGTTTTTTTTTTTGAATTGTCCACTCATATATAACAACAGTTATCTGTTATTATTATTAGAGAGCAAATATATAATTGC
AAACAAAGAAGAGAGATATTTCAGTTTGCTTTCTTCATATTCATATATTTTGTGAGTATTTAATACGAAAGAAATAAAGATGGGATACTG
GAAAGCAAAGGTTCTTCCAAAGATCAAGCAGATCTTTGATAAAAATGGACCCAAGAAAACTGCTGCTGCTGAGGCATGCAAGACTTTTGA
TCAAGCTAAGGAGGAATATAGCAAGGAGTTTGAAGAGAAGAAGACTGAGCTTCAACCCAAAGTTGTTGAAATTTATGAAGCTGCTGCAGT
TGAGATCAAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTCAGATGGGGTTCAGAAATTCCTTGATGACCTTGTCAA
GATTGAATTTCCGGGATCAAAAGCTGTTAGCGAAGCAAGTTCAAACTTTGGGCCTTCCTATGTATCGGGCCCAATTATTTTTGTGTTCGA
AAAAGTTTCCACTTTCATAGTCACAGAAGATAAGAAGGAAGAGGAACCCGCGGCTGCTGATGACGTGCATGCACCAGCCGCCACGTCAAC
TGAAGAGGTGGAGGTGAAGGTGAAGGAGAAGGAGAAGGAGATAGTTATTGAGTCTGGAGAACCAAACAAGGAAGAAGCACCTGCTACTGT
TGTTGCTGACGTGGCACCTGCAACTAAGGTGGAAGAAGCACCAAAGGTGGTTTAATCATCGTATACGTCTAAAAATTTGCATCTTTATCT
TCTTCTTTTTTTTAATGTGTCATGGTTATTTACTGTGAGAAAAACTTGATTTATTATTCTTTTGTTAGTGTTTCTCTCCTTGTTTATTTT
CTTTGTACCATATTATCTCATCAACAAAGTCTTTGTGTATTTTTATTGAAAAAAAAACTCATTTCAATGGTCAATACTCTAGTAATTAAG
ATGTTTATATAAGTCGAAGGGATTGAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (55)

Alignment image suppressed for unigene with 55 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 2 | go: 0 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	461	DREPP	38
2	23522	DREPP	12
5	57764	DREPP	11

Preceding Unigenes (1)

Unigene	Build
SGN-U144115	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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