Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U565642 in the current build, Tomato 200607 #2

Unigene SGN-U214954

Unigene Basic Information

Unigene ID:	SGN-U214954
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	214954
mRNA sequence:	Length: 1533 bp

>SGN-U214954 Lycopersicon Combined #3 (29 members)
ACCTGTTAAACCCTTTTCTTAGTATTTTCCTCTTTTTCTATACAAAAAAAAACTCCAATAATTGAATCGATTTTATATATAAAGAGCCGA
AATAATCCAAGGTCTCTGTAGTCTCAAAAAAATCCATTCCAATTGCCATTTCACTCTTGTTCTAGATACTTCTTTGGAGTTCCTCTCCAT
CACCAATGGCGTCCGATCTGGAGACTAGGGCTAAAGAGGCATTCATTGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAAGCCA
TAACGCTGAGCCCTAAGAACCCTGAACTTTTCGCCGACCGTGCTCAGGCCAATATCAAACTCAACTACTTCACTGAAGCTGTTGTTGATG
CGAACAAGGCCATTGAGTTGGATCCTACAATGTCAAAAGCATATTTACGCAAGGGGTTGGCCTGTATGAAGCTTGAAGAATACCAAACTG
CAAAGGCAGCTTTGGAAATTGGTGCCAGTTTAGCACCAGGAGAGTTAAGATTCAGTAAGCTAATGAAAGAATGTGATGAACATATTGCAG
AGGAAGCTGGCGAATTGCCTAATCTGTCGGTGGATAAAACCTCAGCTAGTGTTGTTGCACATCCTGCATCTGAGTTACCGGACAATGTTG
CTATTGCGCCTGAAGGTGCTCAACCAACGGTCAACCAGTCCCATCAAGGATCTGCTGCCAAACCAAAATACAGACATGAATTTTATCAGA
AACCAGAGGAGGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAGAATGTTGTTGTTGACTTTGGTGAACAAATACTTAGTGTTA
GCATTGATGTGCCAGGTGAAGAAACTTATTCTTTCCAGCCTAGGTTGTTTGGCAAGATAACACCTGCAAAATGCAGATACGAAGTGATGT
CTACCAAAATTGAGATCCGCCTTGCGAAAGCTGAGCTGTTACACTGGACATCGCTTGAGTATACAACGGAACCTGTTGTAATTCAGAGGC
CTATTGTGTCATCAGCTGCCCCGCGGCCCAGTTATCCTTCCTCAAAACTGAGAAATGTAGATTGGGATAAACTAGAAGCTGAAGTGAAAA
AAGAGGAAAAAGATGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTTCAGAGACATTTACCAAGATGCTGACGAGGACACTAGAA
GAGCTATGATGAAATCCTTTGTGGAATCTAATGGGACTGTTTTGTCGACAAACTGGAAAGAAGTTGGCACAAAGAAGGTTGAAGGAAGCC
CTCCGGATGGCATGGAGCTGAAGAAATGGGAGATCTAGAATCGATCCTCTGTTGATGTTTTTTGACTTTGCATTTTAAGTTGTTTCATTG
CTATTTTTATTATAGAAGAATTTGTTCATATTTTCTTTTCTAAGGTTTTAAGTTTTGTTCTTTGCTGTTGGATTGAGATAACAGTAATAT
ATCTTCAAATTGTGGACAGCTTATCTTTTCAAGATCTTGTTAGAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCC
CGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	30	TPR	292
2	23814	CS TPR SGS	10
5	57893	CS TPR SGS	10

Preceding Unigenes (1)

Unigene	Build
SGN-U145509	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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