Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U577270, SGN-U577731, SGN-U578689, SGN-U578802, SGN-U580246, SGN-U581552, and SGN-U592591 in the current build, Tomato 200607 #2

Unigene SGN-U225512

Unigene Basic Information

Unigene ID:	SGN-U225512
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	225512
mRNA sequence:	Length: 3273 bp

>SGN-U225512 Lycopersicon Combined #3 (876 members)
AACATATCAAAAACCTTATCATTTCATTATATAAAAGGATAGTGGACATCAAAAGGTTCATATTGAACCAAAAAAAGAGAGAAGAAGCAA
TATGGCTTCCTCTGTCATTTCTTCAGCAGCTGTTGCCACACGCAGCAATGTTACACAAGCTAGCATGGTTGCACCTTTCACTGGTCTCAA
ATCTTCAGCCACTTTCCCTGTTACAAAGAAGCAAAACCTTGACATCACTTCCATTGCTAGCAATGGTGGAAGAGTTAGCTGCATGCAGGT
GTGGCCACCAATTAACATGAAGAAGTACGAGACACTCTCATACCTTCCTGATTTGTCTGACGAGCAATTGCTTAGTGAAATTGAGTACCT
TTTGAAAAATGGATGGGTTCCTTGCTTGGAATTTGAGACTGAGCACGGATTTGTCTACCGTGAGAACAACAAGTCACCAGGATACTATGA
TGGAAGGTACTGGACCATGTGGAAGTTGCCTATGTTTGGGTGCACTGATGCAACCCAAGTGTTGGCTGAGGTTCAAGAGGCTAAAAAGGC
ATACCCACAAGCATGGGTCAGAATCATTGGATTCGACAATGTGCGTCAAGTGCAGTGTATCAGTTTCATTGCCTACAAGCCAGAAGGCTA
CTAAGTTTCATATTAGGAACAAAATTGTCTTTAGGGACACTTTGTTTTTAAATGCTACTTAGGTCTTTTTTCTTTTTTGTCTTAATTCCA
ACAAACTCTTTGTGTCTTGTACTATTCGGTTTATGTTTTGGATTTATGAGTACCTAATTATATGATAATGATTTGGTGCTTTGTTTGTAA
AAAAAAAAAAAAAAAAAATCTTGTGGTTTATATGACTTTTTGTGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAGGCAA
AAAAAATAATCATGGCTTTATCAAACACCTTATCATTGTCATCATCAAAATCTTCCCCTTTCTCTCTCTAAAAAAATTGTTATTTTATAG
TGAGAGAAAAAGAGGATTCAAGAATCATCAAAAGGCAAAAAAAATAATCATGGCTTTATCAAACACCTTATCATTGTCATCATCAAAATC
CCTTGTTCAATCTCATCTGCTCCATAATCCTACACCCCAACCTCGTTTTTCCCTTTTTCCGACCACCCAACATGGGCGGCGCCACCCTAT
CTCCGCCGTACACGCGGCGGAGCCATCCAAGACTGCAGTTAAGCAAGGAAAATGGAGTCTTGATAGCTGGAAAACAAAGAAAGCTTTACA
ACTTCCTGAATACCCAGATGAGAAAGAACTTGAATCGGTGCTTAAAACACTTGAAATGAATCCACCCCTTGTGTTTGCTGGTGAGGCAAG
GAGTTTGGAAGAGAAGCTTGGTGAGGCTGCATTGGGGAAAGCTTTTTTGTTACAAGGGGGAGACTGTGCTGAGAGTTTTAAGGAGTTTAA
TGCCAATAATATTCGTGATACTTTCAGGATTTTGCTTCAGATGAGTGTTGTTCTTATGTTTGGTGGACAAGTTCCTGTCATTAAGGTTGG
AAGAATGGCCGGTCAGTTTGCAAAACCAAGATCAGATCCGTTTGAGGAGATAAATGGAGTGAAGCTACCAAGTTACAAGGGTGACAATAT
CAATGGTGATACGTTCGATGAGAAGTCAAGAATTCCAGATCCTCATAGGCTTATTAGGGCATACATGCAATCTGCTGCGACTCTTAATCT
TCTTAGAGCTTTTGCTACTGGAGGTTATGCTGCAATGCAGAGGGTCACTGAATGGAATCTTGATTTTGTGGAGAACAGTGAACAGGGAGA
TAGGTATCAGGAACTAGCTCACAGGGTTGATGAAGCCTTAGGATTCATGGCTGCTGCTGGACTCACAGTTGACCACCCTATCATGTCAAC
AACTGATTTCTGGACATCCCATGAGTGCTTGCTTCTTCCTTATGAACAAGCACTTACAAGAGAGGATTCAACTTCTGGTCTTTTCTACGA
TTGTTCTGCTCACATGGTTTGGGTTGGGGAAAGAACCAGGCAACTAGACGGTGCTCATGTCGAGTTTTTGAGAGGAGTTGCGAACCCTCT
TGGAATAAAGGTGAGTCAAAAAATGGATCCAAAAGAGCTAATTAAGCTCATTGACATCCTGAACCCTGCCAATAAGCCTGGAAGAATTAC
TGTAATTGTTAGAATGGGTGCCGAGAACATGAGAGTAAAACTTTCCCACTTGGTCAGGGCTGTACGGGGCGCTGGTCAGATTGTGACATG
GGTTTGTGATCCAATGCACGGGAATACCATCAAGGCACCATGTGGACTCAAAACCCGTGCTTTCGATTCAATCCTGGCTGAGGTCCGAGC
TTTCTTCGATGTGCATGAGCAAGAAGGAAGCCACCCTGGTGGTATTCACCTTGAAATGACAGGGCAAAATGTGACTGAATGCATTGGTGG
ATCACGAACAGTAACCTATGACGATTTGGGCTCTCGCTACCACACTCATTGTGACCCAAGATTGAATGCATCTCAGTCTCTTGAACTCTC
CTTCATCGTAGCTGAGCGACTAAGAAGAAGAAGAATGTCATCTCAACGTCTGTAGGCTTATCTAATTTACCTGTACTTCTCTAGTATGAA
GTCTTGTTTGCTTGGTATCCCAATAACTTATATATGTAGCCTCTGGCCATCCACTGCTAAACACGTTTTAATAAACATGCCTGAGCAAGT
TGCCTGATGAGGTAAATAGGTTTTCTGCAGTGATCAAAGGGGAAATGAACATCAAGTAAAATTAGTCGATTTATCCGGCATCTGTTCTGT
TTATTTTAGTTTGGACTGTAAGTCTAGGTTTTAAGGGTGTTCAGTTTTTCTTTGGGATACTGGTTTTGCTGTTTTAGTCTAATGTGTTTG
CCTAAAAAAAAAAAAAAAAAAGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTTAACAACAA
AGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTT
ACAAACCTCTGCTATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGG
AAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGGTGGTGTCAAGCAAGCCT
CTCACCTTCTCAAATATGACTCCACCCTTGGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	30
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	23
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	12
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	7
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	93
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	10
Solanum lycopersicum	cLER	leaf 4 weeks	5127	95
Solanum lycopersicum	cLES	leaf 4 weeks	5243	56
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	298
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	22
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	54
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	25
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	98
Solanum lycopersicum	cTSB	seed	1880	9
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (876)

Alignment image suppressed for unigene with 876 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (15)

Annotations (manual: 4 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	560	DAHP_synth_2	32
2	22396	DAHP_synth_2	31
5	56570	DAHP_synth_2	31

Preceding Unigenes (4)

Unigene	Build
SGN-U143206	Lycopersicon Combined #2
SGN-U143208	Lycopersicon Combined #2
SGN-U155547	Lycopersicon Combined #2
SGN-U155550	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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