Sol Genomics Network

Unigene SGN-U268252

Unigene Basic Information

Unigene ID:	SGN-U268252
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268252
mRNA sequence:	Length: 982 bp

>SGN-U268252 Solanum tuberosum #4 (117 members)
CAAAGGTTCCCATTTCTTGTCAATTATACAAAGGGCAGTCCTTTTCTAGATCTACTGCCCCCACTCTCTCTCTCTCTCTGTGATTCCTTC
TTCATCACCGCATTGAAAAAAGATGGGTTTATCATTCGGGAAGCTTTTCAGTCGGCTGTTTGCCAAGAAGGAGATGCGTATTCTGATGGT
GGGTCTTGATGCAGCTGGTAAAACCACCATATTGTACAAGCTCAAGCTGGGAGAGATTGTTACCACTATTCCTACCATTGGATTCAATGT
GGAGACTGTTGAATACAAGAACATAAGCTTCACTGTCTGGGATGTTGGGGGTCAGGACAAGATCAGACCATTGTGGAGGCATTACTTCCA
AAACACACAAGGACTTATCTTTGTGGTTGATAGTAATGATCGTGATCGTGTTGTTGAGGCTAGAGATGAGCTGCATCGGATGTTGAATGA
GGATGAACTGAGGGATGCTGTGCTGCTTGTGTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATTACCGACAAGCT
TGGTTTGCACTCCCTCCGTCAACGTCACTGGTACATTCAGAGCACATGTGCTACCTCTGGAGAAGGGTTGTATGAGGGGCTTGACTGGCT
CTCAAACAACATTGCAAACAAGAGTTGAACACGAGATCCATGATTTTTGCAGCTATATTTTTGTCAATATAGACTTCAACAATGTCTAGA
GCACTTGTGCACCTGCTGATCTTTCTTATGCGAGATGGATCCACTTATCACTATTATTTTTTCAGTACATCTTCCTTTCTTTAAAAGAAT
GTTTACTTTACAGTAACTTTAGTTGAATTCATGTAATATTTTACACACTGGGTTTACATATTCTCAATGACTCTGCTTTCGACATTTTGT
TTTAATTAAGACTTGAGGTTCTCTCCCAGTGAAAAAAGGTTTTTAGTTAGGGCTGCTTTTCTTTACTGCAGCAGTTGAACTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
arf	GTPase a	GTPase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	9
Solanum tuberosum	ACDC	Sprouting Tubers	5177	9
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	4
Solanum tuberosum	PPC	leaf 6 week old	5062	5
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	12
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	12
Solanum tuberosum	SWST	Stolon	5942	6
Solanum tuberosum	TBSK	Tuber Skin	4812	9
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	22
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	7

mRNA member sequences (117)

Alignment image suppressed for unigene with 117 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	22020	ARF/SAR	137
5	56311	ARF/SAR	90
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118457	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	119
5	128986	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525) Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) ADP-ribosylation factor - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: rRNA processing (GO:0006364) - Biological Process: ribosome biogenesis (GO:0007046) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	80

Preceding Unigenes (1)

Unigene	Build
SGN-U243231	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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