Sol Genomics Network

Unigene SGN-U268254

Unigene Basic Information

Unigene ID:	SGN-U268254
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268254
mRNA sequence:	Length: 895 bp

>SGN-U268254 Solanum tuberosum #4 (24 members)
GCGCGGTGAACGACAGCTCCATTTCGAGATCTACCTATTCGAATTCTCCGATCGCCCGTCGCCGATCTCCGTTACACAGAGATGGGGCTG
TCTTTCACCAAACTTTTTAGTCGCCTCTTTGCTAAGAAAGAAATGCGTATTCTTATGGTTGGTCTCGATGCTGCTGGTAAAACCACAATT
CTCTACAAGCTCAAGTTGGGGGAAATTGTTACCACTATACCTACTATTGGCTTCAACGTGGAAACAGTTGAATACAAGAACATCAGCTTT
ACCGTGTGGGATGTTGGGGGCCAGGACAAGATTCGACCTCTATGGAGGCATTATTTCCAGAACACACAAGGCCTCATCTTTGTGGTTGAC
AGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGATGAGCTTCATAGGATGTTAAATGAGGATGAACTAAGAGAGGCTGTGCTGCTTGTT
TTTGCAAACAAACAAGATCTTCCAAACGCAATGAATGCGGCTGAAATCACCGATAAGCTTGGACTTCATTCTCTTCGACAGCGGCACTGG
TATATCCAGAGTACATGTGCCACTTCTGGAGAAGGGTTATACGAGGGACTTGATTGGCTATCGAACAATATTTCAAACAAGGCTTAGATC
ATCAATTAGACTCTGCTCTCGCTTGTCGCTCACTTACCTATATCTGGAGTATAGTTGTTAAACACCATTTGGTTATTTTGGATAGAAAGA
AGATTAATCTCTGAAAAATATCCTGCATTTCTTTCCCTTTTCATGTTTTTTCTTGTTAATGAAATCCCATGGTTCAAATTACTTGTGGTT
GTTGGTTAGTTGCTACATTGCTTGCAATGTAAAACATATTTGAGTATAATATTGTTTTTTTGTAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
DQ228323	ADP-ribosylation factor 1
DQ284477	ADP-ribosylation factor
DQ284463	DQ284463 ADP-ribosylation factor 1

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	6
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	22020	ARF/SAR	137
5	56311	ARF/SAR	90
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118457	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	119
5	128986	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525) Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) ADP-ribosylation factor - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: rRNA processing (GO:0006364) - Biological Process: ribosome biogenesis (GO:0007046) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	80

Preceding Unigenes (2)

Unigene	Build
SGN-U243229	Solanum tuberosum #3
SGN-U259004	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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