Sol Genomics Network

Unigene SGN-U268269

Unigene Basic Information

Unigene ID:	SGN-U268269
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268269
mRNA sequence:	Length: 838 bp

>SGN-U268269 Solanum tuberosum #4 (226 members)
GTACCATATTGTAAGTTTGAGAAACATCTAGAGAGAAATGGCAAATCCAAGGGTTTTCTTTGACCTTACCATCGGCGGTGCACCAGCTGG
CCGCGTGGTGATGGAGCTCTTCGCCGATACCACTCCCAAAACCGCTGAGAACTTCCGAGCTCTCTGTACCGGTGAAAAAGGTGTTGGAAA
GATGGGTAAGCCTTTGCACTACAAGGGCTCAACCTTCCACCGTGTGATCCCAGGGTTCATGTGTCAAGGAGGTGATTTCACCGCCGGAAA
CGGTACCGGAGGAGAGTCGATCTACGGCGCCAAATTCAAGGACGAGAACTTCGTGAAGAAGCACACCGGCACTGGAATTCTCTCCATGGC
TAATGCTGGACCTGGAACCAACGGTTCTCAGTTCTTCATCTGTACCGCTAAGACTGAGTGGCTCGATGGAAAGCACGTCGTGTTTGGACA
AGTTGTTGAAGGCTTGGATGTGATTAAGAAGGCCGAGGCTGTTGGATCTAGTTCTGGAAGGTGCTCCAAGCCTGTTGTGGTTGCTGACTG
CGGTCAACTCTAGATCTGATGATGATGTTTTGAACGTTGATGATGATCTAGTTTTATCAGTCTTTTCTATATTTGAGTCGCCGTTTTAGG
CTTTGTTTTTAATTTCAACCTATCTTTCCTGCTTGTGTCTTGTTGGGTCGGGTCGGGTCAAGTTCTAGGGTTAACCGTAATTGGTTGTTG
TGTTGCTTCTACCGGTTTATGTTTAATCTTAAGACTACAATTAAATAAGATACTAATAGACTTGCTGCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATAATAAAACAAACAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cyp	cyclophilin

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	7
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	6
Solanum tuberosum	IVROOT	Root	5850	11
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	13
Solanum tuberosum	PPC	leaf 6 week old	5062	18
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	20
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	3
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	40
Solanum tuberosum	SWST	Stolon	5942	12
Solanum tuberosum	TBSK	Tuber Skin	4812	5
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	33
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	18
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (226)

Alignment image suppressed for unigene with 226 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	101	CSA_PPIase	127
2	22065	CSA_PPIase	84
5	56333	CSA_PPIase	74
1.1	101457	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	137
2	118499	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	78
5	129008	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	68

Preceding Unigenes (2)

Unigene	Build
SGN-U243292	Solanum tuberosum #3
SGN-U243293	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer