Sol Genomics Network

Unigene SGN-U268286

Unigene Basic Information

Unigene ID:	SGN-U268286
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268286
mRNA sequence:	Length: 2850 bp

>SGN-U268286 Solanum tuberosum #4 (133 members)
GAATTGTAAGGTCTCACAATACTCGCCGCCTACTTCTCTCTTCTCTGAACAAAAAGTAATTTGTAGTTACATTAACAACCATTCAAGATG
GTGAAGTTCACGGCTGAAGAGCTTAGAAGGATTATGGACTTCAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTGGACCATGGA
AAATCTACCCTTACTGATTCTCTGGTGGCGGCTGCTGGTATCATTGCTCAGGAAGTTGCAGGTGATGTCAGGATGACAGATACACGTGCA
GATGAGGCTGAGCGTGGTATCACCATCAAGTCCACTGGTATTTCACTTTACTACGAGATGACTGATGAATCCTTGAGGAACTTCAAGGGA
GAGAGAAATGGGAACGAGTACCTCATCAACCTCATCGATTCACCTGGGCACGTCGACTTCTCATCTGAAGTGACTGCTGCTCTTCGTATT
ACTGATGGTGCGCTTGTTGTGGTTGATTGTGTGGAAGGCGTCTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCCCTTGGTGAAAGGATT
CGTCCTGTCTTGACAGTTAACAAGATGGACAGGTGTTTCCTTGAACTTCAGGTTGATGGAGAGGAGGCCTATCAGACGTTCCAAAGAGTT
ATTGAGAACGCTAATGTTATCATGGCTACATATGAGGATCCCCTTCTTGGTGATGTCCAGGTTTATCCTGAGAAAGGTACCGTTGCTTTC
TCCGCTGGGTTGCATGGGTGGGCTTTCACTCTCACCAATTTTGCCAAGATGTATGCTTCCAAATTTGGCGTTGACGAGTCTAAGATGATG
GAAAGGCTGTGGGGTGAGAACTTTTTTGACCCTGCCACCAAAAAGTGGACCACCAAAAACAGCGGGACAGCTTCGTGCAAGCGTGGGTTT
GTTCAATTCTGCTATGAGCCAATCAAGCAGATTATCAACACTTGCATGAATGATCAGAAAGATAAGCTCTGGCCTATGTTGCAGAAGCTT
GGTGTAACCATGAAATCTGATGAAAAAGATTTAATGGGCAAGGCACTGATGAAGCGTGTGATGCAGACCTGGCTTCCTGCAAGTACTGCT
CTTCTGGAAATGATGATATATCATCTTCCATCTCCTGCCATAGCTCAAAGATACCGTGTGGAAAACCTGTACGAAGGACCCCTTGATGAT
GCTTATGCCAATGCCATCAGGAACTGTGACCCAGAAGGCCCACTTATGCTTTATGTATCCAAGATGATTCCAGCATCTGACAAGGGTAGG
TTCTTTGCTTTTGGTCGTGTCTTTGCTGGGAAGGTTTGTACTGGTATGAAGGTTAGAATCATGGGTCCTAACTATGTTCCTGGTGAAAAG
AAGGATCTATATGTTAAGAATATCCAGCGAACTGTTATTTGGATGGGCAAGAGGCAAGAAACTGTTGAGGATGTTCCCTGTGGTAACACT
GTTGCCATGGTTGGTTTGGATCAATATATTACCAAGAATGCAACATTGACCAATGAAAAGGAAGTCGATGCCCACCCGATCAGAGCAATG
AAGTTTTCTGTCTCACCAGTCGTGCGTGTTGCTGTTCAGTGCAAGGTTGCATCTGACCTTCCCAAGCTTGTTGAAGGGTTGAAACGTCTG
GCTAAGTCTGATCCTATGGTTGTTTGTTCTATTGAAGAATCTGGAGAGCATATTATTGCTGGTGCTGGAGAACTCCACCTTGAAATCTGT
CTGAAGGATTTGCAGGATGACTTTATGGGCGGTGCTGAAATTATAAAATCTGATCCTGTTGTGTCCTTCCGTGAGACAGTCCTTGAGAAG
TCTACTCGAACTGTGATGAGCAAGTCCCCTAACAAGCATAACCGTTTGTACATGGAGGCTAGACCAATGGAGGAAGGGCTTGCTGAGGCT
ATTGATGACGGACGCATTGGCCCTAGGGATGACCCCAAGGTTCGTTCCAAGATCTTGGCTGAGGAGTTTGGTTGGGACAAAGATCTTGCA
AAGAAGATTTGGTGCTTTGGTCCTGAGACAACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGTGTTCAGTACCTGAATGAAATTAAG
GATTCTGTTGTTGCTGGTTTCCAGTGGGCTTCCAAGGAAGGTGCATTGGCTGAAGAGAACATGAGAGGTATTTGCTTTGAAGTCTGTGAT
GTTGTTCTTCATTCTGATGCTATTCACAGGGGTGGTGGCCAAGTTATTCCCACTGCTAGGAGGGTTATCTATGCTTCTCAGCTTACTGCC
AAACCCCGCCTGTTGGAACCCGTTTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCCCTCGGTGGTATCTACAGTGTTCTGAACCAGAAG
CGTGGACACGTGTTTGAGGAGATGCAGAGGCCAGGAACTCCTCTTTACAACATCAAGGCTTACCTTCCTGTTGTTGAGTCTTTTGGATTT
TCAGGTACCTTGAGAGCTGCTACTTCAGGTCAAGCATTCCCACAATGTGTGTTTGATCATTGGGAAATGATGTCATCCGACCCATTGGAA
GTTGGCTCACAAGCTAATCAACTCGTCCTTGATATCCGCAAGAGGAAGGGTTTGAAGGAACAGATGACCCCTCTATCCGAGTTTGAGGAC
AAGCTGTAAGCTTGTGGAAGTTTCAACTTGGAAGAGGTTTTTGATGGACACTTTTGCTTAATCGGATCTGCATTAGTTTTGTTTTACATT
TTTCTGTGTTTTGGCAGTATGTTTTACCATTTTCTATGTAGGAGTTTGAACCGAAAGTGAGTTTGTTACTTCATTTATGTCATTTACAGA
GACAAAAATCTTGCCCTTGGTGTTTTCAAAAGTGCTTTTTTAGTTCTCTTAACAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	9
Solanum tuberosum	ACDC	Sprouting Tubers	5177	6
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	9
Solanum tuberosum	SWST	Stolon	5942	20
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	8
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	24
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	8
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	12
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (133)

Alignment image suppressed for unigene with 133 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71378 (860 Aa)

MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLRNFK
GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQR
VIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNSGTASCKRG
FVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASTALLEMMIYHLPSPAIAQRYRVENLYEGPLD
DAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVCTGMKVRIMGPNYVPGEKKDLYVKNIQRTVIWMGKRQETVEDVPCGN
TVAMVGLDQYITKNATLTNEKEVDAPPDQSNEVFCLTSRAVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEI
CLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDL
AKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLT
AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWEMMSSDPL
EVGSQANQLVLDIRKRKGLKEQMTPLSEFEDKLKLVEVSTWKRFLMDTFA

SignalP predicts non-secretion with a score of 0.035

IPR000640 Elongation factor G, C-terminal
IPR004161 Elongation factor Tu, domain 2
IPR005517 Elongation factor G, domain IV
IPR000795 Protein synthesis factor, GTP-binding

Prediction based on longest six frame method

>SGN-P210122 (847 Aa)

QPFKMVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESL
RNFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ
TFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNSGTAS
CKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASTALLEMMIYHLPSPAIAQRYRVENLYE
GPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVCTGMKVRIMGPNYVPGEKKDLYVKNIQRTVIWMGKRQETVEDV
PCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGEL
HLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILAEEFGW
DKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYA
SQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWEMMS
SDPLEVGSQANQLVLDIRKRKGLKEQMTPLSEFEDKL

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22401	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	31
5	56963	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	19
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118816	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129589	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U243323	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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