Sol Genomics Network

Unigene SGN-U268287

Unigene Basic Information

Unigene ID:	SGN-U268287
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268287
mRNA sequence:	Length: 865 bp

>SGN-U268287 Solanum tuberosum #4 (16 members)
AAATTAAGGATTCTGTTGTTGCTGGTTTTCCAGTGGGCTTCCAAGGAAGGTGCATTGGCTGAAGAGAACATGAGAGGTATTTGCTTTGAA
GTCTGTGATGTTGTTCTTCATTCTGATGCTATTCACAGGGGTGGTGGCCAAGTTATTCCCACTGCTAGGAGGGTTATCTATGCTTCTCAG
CTTACTGCCAAACCCCGCCTGTTGGAACCCGTTTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCCCTCGGTGGTATCTATAGTGTTCTG
AACCAGAAGCGTGGACACGTGTTTGAGGAGATGCAGAGGCCAGGAACTCCTCTTTACAACATCAAGGCTTACCTTCCTGTTGTTGAGTCT
TTTGGATTTTCAGGTACCTTGAGAGCTGCTACTTCAGGTCAAGCATTCCCACAATGTGTGTTTGATCATTGGGAAATGATGTCATCCGAC
CCATTGGAAGTTGGCTCACAAGCTAATCAACTCGTCCTTGATATCCGCAAGAGGAAGGGTTTGAAGGAACAGATGACCCCTCTATCCGAG
TTTGAGGACAAGCTGTAAGACATATGTTTGAGATGGCAGCAGATATTTAACCTGCTCAATTGGGTCTGCGAAAGTTTTGTTTTGCATTTA
TCATCTATCTGTTTGGATAATTACTTCGATCATTTTGTGTTGTTGATTAGGATACTAGCTCGTAAGGTTGTTGTTGCAGAACTTATTACA
TCTATCGTTTCTTTTCCATGGAAAACTGTTTCTGTCGTATTTTATTTGAAGATGCCTTTTCGTTCAAAAATTAGTTTCTTAGCAAGTGCG
ATTTCAAATATAATGAAATAATTTCACTGTGTAAAAAAAAAAAAAAAAAACTTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22401	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	31
5	56963	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	19
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118816	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129589	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	18

Preceding Unigenes (2)

Unigene	Build
SGN-U243324	Solanum tuberosum #3
SGN-U259057	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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