Sol Genomics Network

Unigene SGN-U268312

Unigene Basic Information

Unigene ID:	SGN-U268312
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268312
mRNA sequence:	Length: 877 bp

>SGN-U268312 Solanum tuberosum #4 (49 members)
CAAGCTTTCACCTCTGTTGTGTTTGGGTCCTCATATTTTGTGTTAGTCCTTTTTGCTCTTTCCCCCAGATAGCAGAAGAATCCTAGAGAG
AGAGAGAAAGGGAATCCTAGAGAGAGAAGCATGTCGGACGAAGAACACCATTTTGAGTCAAAGGCAGATGCTGGTGCCTCAAAAACTTAC
CCACAGCAAGCTGGAACCATCCGTAAGAATGGTTACATCGTTATCAAAGGCCGTCCCTGCAAGGTTGTTGAGGTCTCCACTTCAAAAACT
GGAAAGCACGGACATGCTAAATGTCACTTTGTGGCAATTGACATTTTCAATGGAAAGAAACTCGAAGATATCGTTCCATCCTCCCACAAT
TGTGACGTGCCACATGTCAACCGTACTGACTATCAGCTGATTGACATCTCTGAAGATGGTTTTGTCTCCCTTCTTACTGAAAGTGGAAAC
ACCAAGGATGACCTCCGGCTTCCCACCGATGAAAGTCTGCTGAAGCAGGTTAAAGATGGGTTCCAGGAAGGAAAGGATCTTGTGGTGTCT
GTTATGTCTGCGATGGGCGAAGAGCAGATTAATGCCATTAAGGATATTGGTACCAAGAATTAGTTGTGCCGCGACATCATAAAATCACTG
CCAAAGCTATAAGACATTATTATATCCTAATGTGGTACTTTGATATCACTAGATTATAAACTCTGTTATTTGCACTGTTGAAAACAAAAG
AAAGAAAACTGCTGCTATGGCTAGAGAAAGTATTGGCTTTGAGCTTTTGACAGCACAGTTGAAGTGAAAATCCTACTTTTATTTATAAAA
AATACTGCTGCTTTTATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
eIF5A3	eukaryotic initiation factor 5A3

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	7
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (49)

Alignment image suppressed for unigene with 49 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	124	RuBisCO_small	107
2	22316	KOW EIF5A_hypusine	35
5	56536	KOW EIF5A_hypusine	33
1.1	101744	Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Translation protein SH3-like KOW	41
2	118632	KOW Translation protein SH3-like Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	41
5	129106	KOW Translation protein SH3-like Eukaryotic initiation factor 5A hypusine (eIF-5A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676)	40

Preceding Unigenes (1)

Unigene	Build
SGN-U243586	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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