Sol Genomics Network

Unigene SGN-U268368

Unigene Basic Information

Unigene ID:	SGN-U268368
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268368
mRNA sequence:	Length: 1046 bp

>SGN-U268368 Solanum tuberosum #4 (40 members)
TCCCCCTAGTAGTAGTAAATACAATTCCGGTGAAAACCATAAAAAAACACACAAACACAACAGTCTCATCTTTCTAATCTATTCCTCTTT
CCTGAACTCCTGCGGCGTAGATCCGAGGAGTTTCAGACAGTCTTTACAAACCCTAACCCCCAATCGCTTTTACCCACTTCTCCTCCTACT
CTTTACTCTTTATTCCTCAGATCTTTAACTCATCTTTATCAGTCATGGCTGGCTTGGCACCGGAAGGTTCTCAATTTGATGCTCGTCAAT
TTGATGCTAAAATGACCGAGCTGCTTGGGACTGAACAGCAGGAGTTCTTCACATCATATGATGAGGTTCATGACAGTTTTGATGCCATGG
GTTTGCAAGAAAACCTTCTTAGGGGAATCTATGCCTATGGTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCA
AGGGTCTTGATGTGATCCAACAGGCACAATCTGGTACAGGAAAGACTGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCT
TAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTG
GTGTGAAGGTTCATGCCTGTGTAGGAGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTTGTTGGTACTC
CTGGTCGTGTATTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTCTGGATGAAGCTGATGAAATGCTCT
CAAGAGGTTTCAAGGATCAGATTTATGATATTTTCCAAATTGCTGCCACCAAAGATTCAAGTTGGTGTTTTCTCTGCCACAATGCCACCA
GAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAA
TTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	9
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (40)

Alignment image suppressed for unigene with 40 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	56354	Helicase_C Cas3_core DEAD	62
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	129042	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U243296	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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