Sol Genomics Network

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Unigene SGN-U268383

Unigene Basic Information

Unigene ID:	SGN-U268383
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268383
mRNA sequence:	Length: 3253 bp

>SGN-U268383 Solanum tuberosum #4 (239 members)
CTTTCCTCCATACTCAAACAACGCCAACAAACTCTTCTTCTCGCCGCGCTTTATCATCGTTCAATTTTGACTAAATTAAGCGATAGAAGA
TGTTTGGGAGGGCACCGAAGAAGAGCGACAACACGAAGTACTATGAGATCTTAGGTGTCCCTAAGACTGCTGCACCGGAAGATCTCAAGA
AAGCTTACCGTAAAGCTGCTATTAAGAATCATCCTGATAAGGGAGGTGATCCTGAAAAGTTTAAAGAGCTTGCACAAGCTTATGAGGTTC
TGAGTGATCCCGAGAAGCGTGAGATATATGATCAGTATGGAGAAGATGCTCTCAAGGAAGGAATGGGCGGTGGAGGTGGTGGACACGACC
CATTTGACATTTTCTCATCTTTCTTTGGTGGCAGCCCATTTGGTGGAGGTGGTGGAAGCAGCAGAGGAAGAAGACAAAGAAGAGGAGAGG
ATGTTGTCCACCCTCTCAAAGTTTCTCTGGAGGATCTGTACAATGGAACATCAAAGAAGCTGTCACTATCTCGCAATGTATTGTGCCCGA
AGTGCAAGGGGAAAGGATCTAAATCAGGTGCTTCAATGAAGTGTTCTGGCTGTCAAGGGTCTGGGATGAAAGTCACTATTAGACAACTTG
GCCCATCCATGATCCAGCAGATGCAGCACCCTTGCAACGAGTGTAAGGGTACTGGTGAGATGATCAATGATAAAGATAGGTGTGGGCAGT
GTAAAGGTGAGAAGGTTGTGCAGGAGAAGAAGGTGTTGGAAGTTGTTGTCGAGAAGGGTATGCAGAACGGACAGAAGATAACATTCCCGG
GCGAAGCTGATGAAGCACCTGATACCGTCACTGGGGACATAGTTTTTGTCTTGCAACAGAAGGAACATCCCAAGTTTAAGCGAAAGGGAG
ATGATCTCTTTGTAGAGCACACCTTGAGCTTAACCGAGGCCCTGTGTGGTTTCCAGTTCATCTTGACTCACCTAGATAATAGGCAGCTGA
TCATCAAGCCCCAACCCGGAGAAGTTGTCAAGCCTGATCAATTTAAAGCCATAAATGATGAAGGAATGCCTATGTACCAAAGGCCATTTA
TGAGAGGAAAACTATACATTCACTTTACTGTAGAATTCCCCGACACATTATCCCCCGAGCAATGCAAGAACCTTGAAGCAGTATTGCCAC
CAAAACCGAAAACACAAATGACTGATATGGAATTGGACGAGTGCGAGGAGACCACCTTACATGATGTTAACATCGAAGAGGAGATGCGGA
GGAAGCAGCAACAGGCCCAAGAGGCATATGACGAAGATGATGAAGACATGCATGGAGGTGCACAGAGAGTTCAGTGTGCACAACAGTAAT
TTGGTAACACGGAAGTTGCACTAAAGAATTAACGTCACGATTCAACTCTTGTTTTCACGTATTTGTATGACAAGATAATGACATTGTCTG
AAGAAATATTTCCTCTGCCGTAAGATATATTATAGTTTACTAGCTTATAATTTCAAGTTTTGGATTTGCTAACTGATACTGTTAAGCAAA
TTTTAATGTTACAAACATATTATTGCAATATGCTTTGATTGATATTGTATCGAAGAATTGATATAAAGAGGAAAAAAAAAAAAAAAAAAA
AAAATTAACCCAATTTTGAGAGAAAGAAAAATCATATAATGGCTTCTGAATTGATCTACCGCGGACCGGAATCACTTCCGGTTCCCGACA
GTTACACTCCCAAACCACACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCG
CAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCGTTCCGGAGGATCGAACTACGCAAACACCGGGATCTACGATT
CGTACTTACCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTG
GGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTT
TGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTTACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGT
TTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATT
ACAAGCATAATCCCGTCAAGACTATTAAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTT
TGCTGACGAGCACCAGCGAGGTGTACGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTGTCC
GAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGACCATGGATTATCACAGAGGTGCTGAAGTTGAGGTGAGAATTGCTAGGA
TCTTTAACACTTATGGACCTCGTATGTGCATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGCTTTAAGGAAGGAGCCTTTGA
CAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTTGAAGGCCTAATGCGGTTGATGGAAGGAGAACATG
TCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGA
TTGTACACAAACCAAACACAGAAGATGACCCACACAAGAGGAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCAAAAG
TGGCTCTTAGAAATGGTCTACCTATGATGGTTCAAGACTTTAGGCAACGTATTTTCGGTGATCACAAAGAAGACAGTGGAAAGATCACCA
CAGCTTAATAGAAGAGAAGGTGTGTATGTTTGGATATTGTTAAACTTGGTCAGGGGTGAAATGCACGCGACGAAAAGATGACTCTTGTGT
TCATGTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTAGTTCTTTTGAATAGTCTTAATAGTTGGTTCTT
TGTCAATTTTGTAATTCTATTATTATCCTTTTGTTAACAGTTGATGTAGTCGACCAACTTTCATTATTATCATAAGAATAAAACTGGAAC
GTTTTTCCCCAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
dnaj	DnaJ

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	34
Solanum tuberosum	ACDC	Sprouting Tubers	5177	14
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	CSWB	Tubers	6124	11
Solanum tuberosum	IVROOT	Root	5850	16
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	6
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	5
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	4
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	STOL	Stolon	6462	22
Solanum tuberosum	SWST	Stolon	5942	11
Solanum tuberosum	TBSK	Tuber Skin	4812	22
Solanum tuberosum	TUBS	Tubers	5976	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	10
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	9
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	14
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	10
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	14
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (239)

Alignment image suppressed for unigene with 239 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	21988	DnaJ_N	254
5	56281	DnaJ_N	140
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118427	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	212
5	128955	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	121

Preceding Unigenes (3)

Unigene	Build
SGN-U243184	Solanum tuberosum #3
SGN-U258974	Solanum tuberosum #3
SGN-U261941	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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