Sol Genomics Network

Unigene SGN-U268437

Unigene Basic Information

Unigene ID:	SGN-U268437
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268437
mRNA sequence:	Length: 2651 bp

>SGN-U268437 Solanum tuberosum #4 (114 members)
TAACTTGTATAAGGAAAAACAAACCCTTCCCAAATTATTCCTTCTTCTGCAATTGTGCAGTTTAAAGCTGCCCTATATTTTTCCCCTATC
TTTTTCTCCTACACAAACCCTTTCCTCTTTTCGGCGTTGCCGGCGGCGATCCTTTGTCTCGTCGGATCTCCGACCTATCCACCTTCCCTC
TCCTCTCTTTATCATCTATCCTACTAAAAAATCGAAAAAAGCGAAAAACATAATCTATCGGAAAAACATCAAAATTTCTAGGGTTTCAGT
ATATCTTCTACTTCTATCAATTTCGAGTTCGATAGACGTCGGCTTTTTGAATTTATTTATATTGTGAGATTTTGTATCTGCGAATAAAAA
GAGGAGAGGGAAGTCAAAAAAAAAATCACAAAAAAATCTGAAAAAAGAAAATTATTTTGGTTTTTGTGTTGAATTTTGATGGCGCAGGTT
CAGGTGCAGCCACAGGGTGCGAATGCTGGTGGTGTGAACCAGTTTGTGACGTCTCTGTACGTGGGTGACCTTGATGTCAATGTGACCGAT
TCACAGCTGTATGATCTGTTCAATCAGCTAGGACAAGTTGTTTCGGTTAGGGTTTGCAGGGATTTGACTACCCAGAGGTCGCTCGGTTAT
GGTTATGTCAATTATGGGAACCCGCAAGATGCTGCAAGGGCTTTGGAAGTGCTAAACTTTACTCCTCTCAGTGGAAAGCCCATCAGGATA
ATGTACTCAAACCGGGACCCAACTGTTCGAAGAAGTGGCACTGCAAACATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCA
CTACATGATACATTTTCTGCATTTGGAAATATCCTGTCTTGTAAGGTAGCTGTGGATTCATCAGGTCAGTCCAAGGGGTATGGGTTTGTG
CAGTATGACGGTGAGGATGCTGCCCAAAAAGCTATTGAGAAACTGAATGGTATGCTGCTGAATGACAAGCAAGTATATGTTGGACCCTTC
GTTCGTAAGCAAGAAAGAGATAGCGCTGTAGATAAGACAAGATTTACCAATGTCTTTGTGAAAAATTTATCTGAAGCAACATTAGAAGAA
GATCTCAAGAAAGCCTTTGGTGAATTTGGTGCCATTACTAGCATTGCAATTATGAAGGATGAAGATGGAAAATCTAGGTCCTTTGGATTT
ATTAACTTTGAAAATGCTGAAGATGCTGCGAGAGCAGTTGAAGCTTTGAATGGTCACAAATTTGATAACAAAGAATGGTTTGTAGGAAGA
GCTCAGAAGAAATCAGAGAGGGAAATGGAATTGAAAAATCGATATGAGCAAAGTGCCAAGGAGGCAGTTGATAAATCACAAGGTTTGAAT
CTATACATAAAAAATTTAGATGACAGCATTAGTGATGACAAGCTCAAGGAAATGTTCTCTACATATGGCACAATCACTTCATGCAAGGTT
ATGAGAGATCCTAGTGGAGTAAGCAAAGGATCAGGATTTGTTGCATTCTCATCTCCCGAAGAGGCTTCAAGAGCGCTTGCAGAGATGAAT
GGAAAGATGATTGTTAGCAAACCTCTGTATGTTGCCCTTGCGCAACGCAAGGAAGAGAGAAGAGCAAGGTTACAGGCTCAGTTTTCTCAG
ATGCGTCCAATTGGAATGGCATCTACAGTTGCACCTAGAATGCCTATGTATCCTCCTGGCGGTCCTGGTCTAGGTCAACAAATATTCTAC
GGCCAGCCACAACCAGCCATGCTTCCCCCACAAGCTGGTTTTGGATATCAGCAGCAACTTGTACCTGGAATGAGGCCTGGTGGGGGGCCT
ATGCCGAATTTCTTTATGCCCATGGTTCAGCAAGGGCAGCAAGGTCAACGTCCGGGTGGCCGACGTGGAGGTGCTGTTCCATTGCAGCAA
GGACAGCAGCCAGTTCCGCTGATGCAGCAACAGATGTTTCCGAGGGGGCGTGGATATCGATATCCTCCAGGACGTGGCCTTCCTGATGTT
GGCTTTCCAGGAGTAGGTGGTGGCATGTTCTCTGTCCCATATGATATGGGTGGCATGCCTGTGCGTGATGCAGGAATTGCCCAACCAATT
CCGGTAGGGGCTTTGGCTACTGCTCTGGCTAATGCTTCTCCAACAGAGCAAAGGACGATGCTAGGTGAAAATCTGTACCCCTTGGTCGAA
CAGCTTGAACCAGAAACAGCAGCGAAGGTAACTGGCATGCTTTTGGAGATGGACCAGACAGAGGTATTGCACTTGCTTGAGTCTCCTGAG
GCTCTGAAAGCCAAGGTTGCAGAGGCGATGGACGTTCTGAGGAATGTTCCTCAGCAGCAGGCCAGTAATGCTGCTGATCAGTTGGCTTCA
TTGTCACTGAATGATGGTCTGGTTTCTTGAGTTCTGACGATATCCAATGTTTGTCGCCATCAATTATTTGTTCGTTTCTAGTGTGCTTTT
AATTCTGGATTTTCTTCACCCAGAAAATCTGACTTCTCTTAAAAGACATTCTTAGACTTTAAGTGTTTGACTATCAGATATTGTTGGGTT
GCATTTTGGTTCAGTTTGGAATTTGTTGGACATCCAACTTGGTTTATCAGAACCTTTGCGCTGGTATTTTTTATTTATGGATTTTCTTGT
TTATTTTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	8
Solanum tuberosum	ACDC	Sprouting Tubers	5177	6
Solanum tuberosum	CSCH	Tubers	5038	8
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	5
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	6
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	STOL	Stolon	6462	6
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	9
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	17
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	9
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (114)

Alignment image suppressed for unigene with 114 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	22127	RNA_rec_mot	59
5	56572	RNA_rec_mot	31
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118573	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	50
5	129237	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	29

Preceding Unigenes (1)

Unigene	Build
SGN-U243480	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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