Sol Genomics Network

Unigene SGN-U268461

Unigene Basic Information

Unigene ID:	SGN-U268461
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268461
mRNA sequence:	Length: 1041 bp

>SGN-U268461 Solanum tuberosum #4 (108 members)
CTACGCATTTTACTTTTTCTTCTCTCACACAAAAAAGCTCTGCCGCTCTCTCTCTTGCTGGAATTTTCTTCTCATCCTTTCGACAATGGC
TTTACCAAACCAACAAACTGTAGATTATCCAAGCTTCAAGCTTGTTATTGTGGGGGATGGAGGAACTGGGAAGACAACTTTTGTCAAAAG
GCATCTCACTGGTGAATTTGAGAAAAAATATGAACCCACTATTGGTGTGGAGGTTCATCCACTAGACTTCTTCACAAATTGTGGGAAAAT
TCGCTTTTATTGCTGGGATACAGCCGGACAAGAGAAGTTTGGAGGTCTCAGAGATGGTTACTACATTCATGGGCAATGTGCAATTATCAT
GTTCGATGTTACAGCCCGTCTGACCTACAAGAATGTTCCTACTTGGCATAGAGATCTTTGCAGGGTTTGTGAAAACATCCCCATTGTTCT
CTGTGGAAACAAAGTTGATGTGAAGAACAGGCAGGTTAAGGCAAAGCAAGTTACCTTCCACAGGAAGAAAAATTTGCAATACTATGAGAT
CTCAGCAAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTACCTTGCTAGAAAGCTTGCTGGGGATGGTAATCTTCACTTTGTGGAATC
ACCTGCACTTGCTCCCCCAGAAGTACAAATTGACTTAGCTGCACAGGCACTGCATGAACAGGAGCTTCAACAAGCCCTTAATCAGCCACT
TCCAGATGACGATGATGAAGCATTTGAATAGATGGCATAGCTCAGAGCAGATCAGTTTCACTGTTGCACCTTTCCATATTCCTAGTCCTT
AAATTTTCTCTATTTGGACTTTTGTCTTTGTTGTTTGAGGATCTATTTGCTGCTTCCTTGTATTATTGATTGGTTATTAGATATGTTCGT
CTGGGGCCATGAGGTTTTGTTTTGGTAGGTTAGATATTCCAATCCTGATGTAAGGGCGCACATTGTCAAGGCTCTGTTTTGAGCTTGTTA
TAATATTACTTGGTTTCATATTCGACAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ241831	Ran/TC4
DQ207866	DQ207866

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	5
Solanum tuberosum	PPC	leaf 6 week old	5062	6
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	5
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	STOL	Stolon	6462	6
Solanum tuberosum	SWST	Stolon	5942	13
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	7
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	20
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	9
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (108)

Alignment image suppressed for unigene with 108 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	21981	Ras_trnsfrmng	310
5	56774	RAN Small_GTP Ras_trnsfrmng ARF/SAR	23
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118418	Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	280
5	129498	GTP-binding nuclear protein Ran - Cellular Component: exosome (RNase complex) (GO:0000178) - Molecular Function: GTP binding (GO:0005525) - Biological Process: intracellular protein transport (GO:0006886) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	20

Preceding Unigenes (3)

Unigene	Build
SGN-U243438	Solanum tuberosum #3
SGN-U243439	Solanum tuberosum #3
SGN-U243440	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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