Sol Genomics Network

Unigene SGN-U268477

Unigene Basic Information

Unigene ID:	SGN-U268477
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268477
mRNA sequence:	Length: 1350 bp

>SGN-U268477 Solanum tuberosum #4 (114 members)
GGACTTTGTTATGCAATTTTCTTCCCTATAAATGGCCCTCCATAGCTCAAATGAGATATCAGACAATTTAAAGAAGTACTATTAACATTT
AGAAGATTTCTTTCTTTCCCAGATTCATTGACAATGGCGGAGCTTCTTTCAAACTGGTCAAGCACATTAGAAGCAGTTCCTCCAAGTCAT
TGCATCCCAGTGCATGAAAGACCATCGGATACAGTTGAAATTGTGGACACTATTCCAGTCATTGATTTGGGAAAAGCTAATGGTGAAGAA
CGAAGTGCTGTTGTTAAAGATCTTTTGAAAGCTTTTGAAGAATATGGGTTTTTTCAGATAATCAATCATGGAGTACCCGTAGATCTAATG
GATGAAGCAATGAAAGTGTACAAAGAATTTTTCAGTCTGCCAGCAGAAGAGAAAGCAGAATATGCAAAGGATGCAGCTAATGATACAAAT
AGGGGTGCAGCTACACTGTACAGTAGCAGCGCTAAGCATTATGATTCAGAGGAGCATCGTTACTGGAGAGATGTCTTGGAACATAGCTGC
AATCTTGATGGAAAAGACAAAAAAACTTGGCCTAGTAACCCTCCAAGATATAGGGAGGTTATTGGTGCATATGGAGATGAATTGAGAAGG
GTGAGCAAAGTTATCTTGGGTCTGTTAGCTGAAGGGCTAGGTTTGGAGGCAGGGTTCTTTGACACAGAACTTGGGCAGAGAATGCTTGTG
AATCACTATCCAGCATGCCCAGATCCAAGTTTAACCTTGGGAGTTGGGGGACATTGTGATCCTAATCTCATAACCATTATCCAACAAGAA
GTGTATGGTCTTCAAATATTGAAGGATGACAAATGGATTGGTGTGCAGCCTATCCGCAATGCATTTGTGGTCAATTCTGGTTTACCAATT
ACGGTAGTTAGCAATGGAAAGCTAACTAGTGTTGCACATCGTGTGGTGACAAACACAACTCATTCACGAACCTCCATTGGTACTTTTATT
TGCCCACACGATATTGTTGAACCTGCAAAAGCACTTGTTGGTCCGGAGAATCCTCCACAGTTCAAATCCTTTAATTGGGGAATTGATTTT
ATGCCACATTACCTCAGCAAGAAATCAGTTTACCACGCATCATTGGAGCCCTTCAAAATCGATGCTTAAGCATTTGTGTGCCAGAAGGAT
CAAGTCTATGCTGCTACTTTTAATTTCCACTAAAATAAGAGCTTTAATTTACAATGTCTTTCTAGTTTGTATCCTACCTTTGTTACCTAT
TTCATGAATAAGAATCTTTCTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
h6h	hyoscyamine 6-beta-hydroxylase	hydroxylase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	5
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	STM	mixed tissues	14805	9
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	40
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	33
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (114)

Alignment image suppressed for unigene with 114 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	13	2OG-FeII_Oxy	479
2	21976	2OG-FeII_Oxy	385
5	57176		16
1.1	101380	2OG-Fe(II) oxygenase	456
2	118413	2OG-Fe(II) oxygenase	345
5	129362		24

Preceding Unigenes (2)

Unigene	Build
SGN-U243318	Solanum tuberosum #3
SGN-U243319	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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