Sol Genomics Network

Unigene SGN-U268513

Unigene Basic Information

Unigene ID:	SGN-U268513
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268513
mRNA sequence:	Length: 3142 bp

>SGN-U268513 Solanum tuberosum #4 (105 members)
CGCCGATCGAGTTTCCATAACCCTAATCTAGCTCCACCATGGCCACCGCCGCAGCTACATCCTCATTCATCGGAACTCGGCTGCCGGAAA
TCCACTCCGGCGCCGGTAGAGTCCAAGCCCGATTCGGATTCGGACAGAAAAAAGCCGCACCGAAGAAGGCTGCGAAGAAGCAAATTCCGG
ACAGACCGTTGTGGTACCCAGGAGCTAAGTCACCGGAGTATCTAGACGGAAGCCTTGTTGGTGACTACGGATTCGATCCGTTCGGTTTGG
GGAAACCGGCGGAGTATTTGCAATATGATTTGGATTCGTTGGACCAGAATTTGGCGAAGAATTTGGCTGGTGACATTATTGGAACGAGAA
CTGAAGTTGCTGATGTGAAATCAACTCCGTTTCAGCCTTACAGTGAGGTTTTTGGGCTACAGAGGTTCAGAGAATGTGAACTGATCCATG
GAAGGTGGGCTATGTTGGCTACTCTTGGTGCACTCACTGTTGAGTGGCTCACTGGTATTACATGGCAAGACGCCGGAAAGGTTGAGTTGG
TTGAGGGATCATCCTACTTAGGGCAACCACTCCCATTCTCCATTACAACATTGATCTGGATTGAGGTTCTTGTGATTGGATACATCGAAT
TCCAAAGGAACGGCGAGCTTGACCCAGAAAAAAGGCTTTACCCAGGTGGATCATTCTTCGACCCATTGGGCCTTGCTGCTGACCCGGAGA
AAAAGGCCACCCTTCAACTCGCTGAGATCAAGCATGCTCGCCTCGCCATGGTTGCGTTCTTGGGCTTTGCTGTCCAAGCTGCTGCTACTG
GAAAAGGCCCACTTAACAACTGGGCTACCCACTTGAGCGACCCGCTTCACACTACCATTTTCGACACCTTCGGATTCTACTCTTAAGCAA
CATGCATGCATGGTTTTCGTTGAGGATGGTTTTTACGTATATTATATTCATCTTCATCTTGTAAAAATTGTAACATTAATTTGACACTAT
TTCAAGGAGAAGCCTATATCAGACTTGTTGTTTAATTAACCAAATTTCTTCTTTTTTTCTTCCATAGTAGCAATCTATCAACAAAAACAG
AGACCCCATTACAAGAATCTTGGAATTTTAGTTTTGGGTTTAAGAGGAAGGGGTTATTGTATTTGCAGTTTTGAGGGTAAAGCCCAGTTT
AACAAGTTGTAGACATCACGGCTATACACAAAGTAAACCGCCGACCACTTTTACATGTTCCAGCAGTACGTCGTAAGGGTTGTGTAACAG
CTACTAACCCTGCGCCGCACGGTGGACGTGGCGCTTTGCCCTCTGAAGGTGGTAGTCCTTCCGACCTCCTCTTCCTTGCCGGCGGCGGTT
CTTTCCTCTCCTTCTCCTACTAGATATAGTTATACTTACCGTAGATCTCTAGCTTATTACATACAGTTCTATCTAGTATTCTCTTGATTA
TTCGAAGAAAAACACAAAAAGATGATGCTCAAGATTAAGAGGGTTCCTACACTTGTTTCTAACTTTCAAAAGGATGAGGCTGATGAAATT
GGTGCTCGTGGTGCTGGTTGTGGCCGGAATTGCCTCAGGAATTGCTGCCTTCCAGGTTCAAAGCTTCCACTGTATGGTTTCAAAAATTTG
AGCTACGGCAAGTCTGTTGCCGCCGATGAAACAAAGGAATCTCCGATCGACTTTCTGGAATCCCTTGTTCTTGGGGAATGGGAGGATCGT
CAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACTAAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAG
GGAAGGCACCTCAAGAAGAGGCCAACTGAGTTTCGAGTTGATAAGGTGCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTT
GGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAAATGCACCAATTGATCCTGAGAAATCT
CCAAGTGTCATTGCCATCAATGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATC
GACAGGGACAGCTTCCTGCTTGCATTGCACATGGCTGCTGAAGCAGCAAACCCATACTTCCGATTGGGTTACAACAGCTTGGGTGCATTT
GCCACCATCAACCATCTTCACTTCCAGGCTTATTTCTTGGCTGTGCAATTCCCCATTGAGAAGGCCCCAACTCAGAAGATAACCGTCACT
GATACTGGAGTGAAGATATCGGAGATGCTTAATTACCCAGTTCGAGGTCTCGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCAAT
GTCGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCCGATTCAGGAAAAAGGATATTCATTCTC
CCACAGTGCTATGCAGAGAAACAAGCTCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGT
GGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCCGAGGTCTCACTCTCTGAA
GCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCTATTAGTCTCAGTGTTGAAGAGAATGAGAACGCCAATGATGGTTCTCCTGAG
GATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCATAGTACCATGGTTCCCGCCTAGGGGTTTCACGGC
CCAGCTCTGGTGTTTATCGCATGTTATTATTTCATGAATTTCCATCTCTAGCTGCCCTTGTGAAATATCACTAAATAAGGCAAAACCATG
TTCAATGTATTGATGAATTTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAGCCATGTTCTATATATA
TGTAATGTGGGGTTGTGTGTGAAATGACCTTGGGGTACTATGTATGCTGTTTTTAATTAAGACAATATACTAATAGAAGTTGGATTTCCC
AATGACAACTCTTGATNNTAAAATTTAAAGGTAAAATTGAAAGTTGAGAGTTTTTAATGCAATATTAATATGGGTATTATTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	8
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	10
Solanum tuberosum	PPC	leaf 6 week old	5062	8
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	7
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	12
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (105)

Alignment image suppressed for unigene with 105 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	57	Chloro_ABbind	219
2	23490		12
5	56849	Chloro_ABbind	21
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	119724	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	13
5	129425	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	22

Preceding Unigenes (3)

Unigene	Build
SGN-U243577	Solanum tuberosum #3
SGN-U244662	Solanum tuberosum #3
SGN-U244663	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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