Sol Genomics Network

Unigene SGN-U268556

Unigene Basic Information

Unigene ID:	SGN-U268556
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268556
mRNA sequence:	Length: 1949 bp

>SGN-U268556 Solanum tuberosum #4 (100 members)
CATCCATCCATCTCTCTCTCCATAACAAAAGAGGTGCCCAAATAGAGAAAATTACACTTCATAAACTCTCACATTTGTCTTTTCACAAAA
TAGCAATGGCTCTTTCAAGTACTAGCACTACCAACTCTCTTCTCCCCAACAGATCTTTGGTTCAAAATCAACCCCTTCTGCCTTCTCCTT
TAAAGAATGCATTTTTCTCCAACAACTCAACCAAAACCGTTAGATTTGTTCAACCTATCTCAGCTGTTCATTCATCTGATTCTAACAAAA
ACCCCATTGTTTCCGATAAGCCCTCCAAGTCTTCTCCACCGGCGGCCACTGCCACCACGGCTCCGGCTGTGACCAAAACTGAATGGGCGG
TGGATAGCTGGAAAACTAAGAAGGCACTTCAGCTACCGGAATACCCAAATCAAGAGGAGCTTAGATCTGTTCTTAAGACGATCGATGAGT
TCCCTCCTATCGTGTTTGCTGGTGAGGCTAGGAGCCTTGAAGAACGCCTTGGTGAAGCTGCTATGGGAAGGGCGTTTTTGTTACAAGGAG
GAGATTGTGCTGAGAGTTTCAAGGAATTCAATGCTAATAATATTAGGGATACTTTCAGAATCCTCCTTCAAATGGGTGCTGTTCTTATGT
TTGGCGGTCAGATGCCTGTGATCAAGGTTGGAAGAATGGCTGGGCAATTTGCAAAGCCAAGATCAGATTCATTTGAGGAGAAGGATGGTG
TAAAGCTGCCGAGTTACAGGGGAGACAATGTCAACGGTGATGCATTTGATGTCAAGTCCAGGACTCCTGACCCCCAGAGGCTGATCAGGG
CCTATTGCCAATCTGCAGCTACTTTGAATCTGTTGAGGGCTTTCGCTACTGGAGGATATGCTGCCATGCAGAGGATCAATCAGTGGAACT
TGGATTTCACAGAGCATAGTGAGCAGGGTGATAGGTACCGTGAACTAGCTAGTAGAGTGGATGAGGCCCTTGGTTTCATGACTGCAGCTG
GACTTACAATGGACCATCCTATTATGAAAACCACTGAGTTCTGGACATCTCATGAGTGCTTACTTTTGCCCTATGAGCAGTCACTAACAC
GTCGGGATTCAACTTCTGGCCTTTACTATGATTGCTCTGCTCATTTCCTTTGGGTTGGAGAGAGAACCAGGCAGTTGGATGGTGCCCATG
TTGAGTTCTTGAGAGGAATTGCCAACCCCCTCGGTATTAAGGTGAGTGACAAGATGGACCCAAGTGCATTGGTCAAGCTCATTGAGATTT
TGAACCCACAAAACAAAGCTGGAAGGATTACAATAATTACCAGAATGGGAGCAGAAAACATGAGGGTTAAACTTCCTCATCTTATCAGGG
CAGTCCGAAGAGCAGGACAAATTGTGACTTGGGTATCTGATCCTATGCACGGAAATACCATCAAGGCTCCTTGTGGTCTAAAAACTCGAC
CTTTTGATTCCATCAGGGCCGAGGTAAGAGCATTCTTTGATGTTCATGATCAAGAAGGAAGCCACCCAGGAGGAGTTCATCTGGAGATGA
CAGGCCAAAACGTCACAGAGTGCATCGGTGGATCACGAACTGTGACCTTTGATGATCTGAGCTCACGTTACCACACCCACTGTGATCCTA
GGCTCAATGCATCTCAATCCCTTGAGCTCTCATTCATTATCGCAGAACGTTTGAGGAAAAGGAGGCTCGGATCGCAAAGCGTTTTAGGGC
AATAGATATTTGGAAATGTTCAAGTACTGCCTTTTTCTATTTACTTCTTCACTTATATTATGAATGTTTGTATTAAAAATTGTATTTTCT
TAAATCCTATTTGGAGGATGTATGTTATGTTTGCGCTACGTGCATACTGAAATTGTTTTAATGTAATGAGAGTTTGGTGAGACTAAGCAA
TAAAGCAAGGAAGTTACTCTTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
aro1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	DAPH synthase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	IVROOT	Root	5850	7
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	16
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	15
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	7
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	12
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (100)

Alignment image suppressed for unigene with 100 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	560	DAHP_synth_2	32
2	22396	DAHP_synth_2	31
5	56570	DAHP_synth_2	31
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118869	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27
5	129282	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27

Preceding Unigenes (1)

Unigene	Build
SGN-U255478	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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