Sol Genomics Network

Unigene SGN-U268614

Unigene Basic Information

Unigene ID:	SGN-U268614
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268614
mRNA sequence:	Length: 1410 bp

>SGN-U268614 Solanum tuberosum #4 (73 members)
AAAAGAGGCCACTCCTTTAATACGCTCCACTTTGCTCTCTCACTTTTCTTCTTTTCGCTTCCCCCACCCCATCCCAATGGATTCTCTCAC
TCTCATTTGTACCGCCGCTCTTCTCGCCGCCGGCGGACTTTACTGGTTCATTTGCTTTTTTGGCTCCGCCGAGGTTAAGGGTAAACGGGC
CGTCCAACTTACCGGCGGCTCCATCGATAAAGAGAATGTCCAAGACAACTATAAACAGTACTGGTCTTTCTTCCGAAGCCCTAAGGAAAT
CGAAACCGCCGATAAAGTCCCTGTATTCGTAGATACATTCTATAATCTCGTTACTGATATTTACGAATGGGGTTGGGGTCAGTCTTTTCA
CTTTTCCCCTTCTCTCCCTGGTAAATCTAACCGTGAGGCTACTCGTATTCACGAGGAAATGGCCGTCGATCTATTAGGTGTGAAGCCCGG
GTCCCGCATTCTGGATGCTGGTTGTGGTGTGGGCGGGCCGATGCGGGCTATTGCGGCCCATTCTAAAGCTAATGTGGTTGGAATCACCAT
TAATGAGTATCAGGTGAAACGAGCGAGGATGCACAACAAAAAAGCAGGGCTCGATTCACTTTGCGAAGTTGTTTGCGGGAATTTCCTGCA
AATGCCTTTTGCAGACAACAGTTTTGACGGAGTTTATTCAATTGAAGCTACATGCCATGCTCCTAACCTTGAAGAAGTGTACCAGGAGAT
CTACCGGGTGTTAAAACCTGGATCCCTGTACATTTCTTATGAATGGGTTACAACGGAATTGTACAAAGCCGAAGACCCGGAACATGTAGA
GATTATCCATGGGATTGAAAGGGGTGATGCTCTGCCAGGGCTGAGAACCTACAAGGATATTGCTCAAGTTGCTAAGAAAGTGGGTTTTGA
AGTGGTGAAAGAGAAGGATTTAGCAAAGCCCCCATCACATCCATGGTGGACAAGGCTGAAAATGGGGAGAATGGCCTACTGGAGAAACCA
CATTTTGGTCACAATTCTTGCATTTCTTGGAATTGCACCAAAAGGAACGGTTGATGTTCACGAGATGCTGTTCGTGACTGCTGATTATTT
AGCTCAAGGTGGTGAAAAGGGTATTTTCTCTCCAATGCATATGATTCTCTGTAGAAAACCTGCAGCAGAGTAAAAACCCAAATCCAAATC
CAAATTATTGCTCTAGAGATTGACCATGGAGGTTAATTTCACTCTGTTGTCCCTTCCTTCCATTTTAGCTTTTGTTTTCTTATCGAACGA
ATTGTTGTTATTTTCCTTTGTTACTTGTAGTTTCGATCTATCTCTTTTTGTTCTTGTTTCAATCTATAAACTAGAAAAAGAACCATCTTT
ATTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACGCTTTCTGTTGAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	13
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	8
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (73)

Alignment image suppressed for unigene with 73 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	154	SAM_bind	88
2	22651	SAM_bind Ubi/men_trans UbiE/COQ5_Metrf	22
5	57907	SAM_bind Ubi/men_trans RNA_methylase UbiE/COQ5_Metrf TPMT	10
1.1	101467	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	119
2	119065	Sterol methyltransferase C-terminal SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11	21
5	130378	Sterol methyltransferase C-terminal SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11	10

Preceding Unigenes (1)

Unigene	Build
SGN-U243633	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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