Sol Genomics Network

Unigene SGN-U268729

Unigene Basic Information

Unigene ID:	SGN-U268729
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268729
mRNA sequence:	Length: 947 bp

>SGN-U268729 Solanum tuberosum #4 (36 members)
AAATAATTCAGCTATAAATGCTTTGTTCTACAGCTCGTGTTCTTCTCATCCCAAAGCAAAATCTCAGTATTTTAAGGCGATTTTCTTCGA
TTCTAAGACAAACCCAGTTCAATTCTGTGTTTAATCTTCCTGTTTCGTCTTTCTCAAGGCCGATCCGAACAGTTTTTCCCAATTCTTTTG
TTACCTCTAAGGGTTTTGAGTTGTGGGGTTTAAGATCAGATCATACCATGGCTAGTCAATCCAGCAATCCTCAATCTGTTTATGATTTCA
CTGTCAAGGATGCTAAGGGCAAGGACGTTGATCTCAGTATTTACAAGGGAAAAGTCCTTATCATTGTCAATGTTGCATCACAGTGTGGCC
TGACTAATTCAAACTACACCGACATGACTGAGTTATACAAGAAATACAAGGATCAAGGTTTGGAGATTCTGGCCTTCCCTTGCAACCAGT
TTGGTGGACAGGAGCCTGGAAGCATTGAAGATATCCAGCAAATGGTCTGCACTCGCTTCAAGGCCGAGTACCCCATATTTGATAAGGTTG
ACGTGAATGGCGATAATGCTGCTCCATTGTATAAGTTTCTGAAATCAAGCAAAGGTGGGTTCTTTGGAGATGGTATCAAGTGGAACTTCT
CCAAATTCCTCATTGACAAAGAAGGACACGTCGTTGATCGCTACTCTCCAACAACTACTCCAGCTAGCATGGAGAAGGATATCAAGAAAC
TCTTGGGGGTTGCTTAAGCTCCGGAGTCTGGACTCCGCGCTGTTTCTGCATTTTGTGCTAGAAATAATGAAACATATCATAGCAAATAAG
TTCTATGTTTGATGTAATTTTCTTCTTGTTTTACCTAGTACTATGTTTGCTACTTGTACAATTTCAATATACTGAATATTTCTATTTCCA
AGTATTAAACTCAAGTTTTAAATCTCAACATTTGGTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	4
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	374	Glut_peroxidase	45
2	22216	Glut_peroxidase	44
5	56433	Glut_peroxidase	43
1.1	101728	Thioredoxin-like fold Thioredoxin fold Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979)	43
2	118635	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	41
5	129121	Glutathione peroxidase - Molecular Function: glutathione peroxidase activity (GO:0004602) - Biological Process: response to oxidative stress (GO:0006979) Thioredoxin fold Thioredoxin-like fold	39

Preceding Unigenes (1)

Unigene	Build
SGN-U243982	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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