Sol Genomics Network

Unigene SGN-U268850

Unigene Basic Information

Unigene ID:	SGN-U268850
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268850
mRNA sequence:	Length: 1450 bp

>SGN-U268850 Solanum tuberosum #4 (35 members)
CAAGAGTTATTCCCTCTCTCCTTACCAATGGAGAAGTTTAATGTTGCTAGAGTCTTATTGTTGCTTCTTCAACTTGGAACTTTGTTCATT
GCCCATGCATGTCCTTATTGTCCATATCCTCCTTCCACCCCAAAACACCCAAAATTGCCTCCTAAGGTAAAACCACCTTCTAAACAACCA
CCATATGTGAAACCACCTACTACCCCTAAACACCCTAAATACCCTCCACATGTTAAACCACCTTCTACCCCTAAACACCCCCCACAAAAA
CCATGCCCTCCTCCATCTCATCATGGCCCTAAGCCACCAATTGTAAAACCTCCACATGTACCAAGACCTCCTATAGTGCATCCTCCTCCC
ATTGTCTCTCCACCTTCCACCCCTAAACCACCAACAACACCACCATTCACTCCAAAACCACCATCACCAACACCACCTATTGTCTCACCC
CCTATTGTTTATCCACCAATCACTCCAACACCACCTATTGTCCATCCACCAGTCACTCCAAAACCACCATCACCAACACCCCCTATTGTT
TCACCCCCTATTGTTTATCCACCAATCACTCCAACACCACCTATTGTCCATCCACCAATCACTCCAAAACCACCATCACCAACACCACCT
ATTGTTTCACCCCCTATTGTTTATCCACCAATCACACCAACACCACCTATTGTGTCACCTCCAATCATTCCAACACCACCTATTGTTTCT
CCACCTTTTGTCCCCAATCCTCCGGTGGTAATACCACCACCCTATGTGCCAAGTCCTCCGGTTGTTACTCCACCCATAGTTCCAACACCC
CCTACACCATGCCCACCGCCACCACCAGCACAACCAACTTGTCCCATTGATGCTCTCAAGCTAGGTGCTTGTGTGGACGTGTTAGGAGGA
CTAATCCACATTGGAATCGGTGGAAGTGCTAAGCAAACATGTTGTCCACTTCTAGGAGGACTTGTAGACTTGGATGCAGCCATTTGTCTT
TGCACAACCATTAGACTCAAACTCTTAAACATAAACATCATTCTTCCCATTGCTCTACAAGTTCTTATTGATGACTGTGGCAAGTATCCA
CCCAAAGACTTCAAGTGTCCTTCAACCTAAATCAAGGATATTAAACAGGACATTTGATTGATTCTGCCGCACTGTCATAGTTGAAGGCAC
ATTAAATGTGTGAAAGTGCAATTTCCATTTTATCATGGCAATAAATTGAGAAAAAAGGGAGGGATATTAATTAAGCTTTGATTTGACGTG
TTTAATTAGCTTTTGATTAATGTACTGAATGTTGTGTTTTCATTATTGTTTTAGGGAAATACTAATGGTGTTTAATATAGTGGAGTATTC
CTGATTTGATTGTATGAAGTATGTATGAACATGAAAAATGAGGAAAGAATCACGTAATTTACCGTGTGTTTCTCTCTCGATTCAAAAAAA
AAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	19
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1	Prot_kinase	3744
2	21978	Extensin_2	350
5	56596	AAI	30
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118412	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor	351
5	129180	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor	33

Preceding Unigenes (1)

Unigene	Build
SGN-U243599	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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