Sol Genomics Network

Unigene SGN-U268902

Unigene Basic Information

Unigene ID:	SGN-U268902
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268902
mRNA sequence:	Length: 2425 bp

>SGN-U268902 Solanum tuberosum #4 (52 members)
CTTCTGCGCCTAACTGCAGAATACACCGTTTTCGGCAGGAGAGCAATTCCCCTCACATCAAATTTATCATGCCTGCACTTGTTGTAACTG
AAGAAACAATGGCCTCCGAGGTATCCAAAAAAAAAATGAAGAAGACACCCAAAACTGATCTTGAAACTCCTATTGATAAGAAAACCAAAG
AGAAAAAGTCAAAAAAATCCAAGATTGATTCTGGGTCTGATTCAGAGGACGCAAAAAGGAGTAAAAAGAAAGAGAAAAAGCGAAAAGCTT
TGGACTTGGATGGTGAGAAGAGTGATACGAGCTCAGAGATATGCGAGCCGGTAGATTTGAAGAAGAATAAAAAGGCTAAATTGGACGAGG
AAGAAGTGATGGTTGAGAAGAAAGTGGTGGATCCTAATGCTTTGTCTAATTTTAGGATTTCAAAGCCTTTAAAAGAGGCTTTGAATTCTA
AGGGAATAGAAGCACTTTTTCCTATTCAAGCTATGACTTTTGATGATATTCTTGATGGATGTGATTTAGTTGGTCGAGCTCGTACTGGTC
AGGGTAAAACGTTGGCCTTTGTTTTGCCCATTTTGGAGTCCCTAACAAATGGTCCTACTAAAGCATTGCGAAAAACAGGATATGGGAAGG
CCCCTAGTGTTCTGGTGCTTTTACCTACTAGGGAATTGGCACTTAAGGTGTTTGCTGACTTTGAAGTTTATGGCCGGGCTGTTGGGCTCA
CTTCGTGCTGTCTGTATGGAAATTCTCCTATGGGTGCACAACAGGCTCAACTAAAAAGAGGAGTTGACATTGTAGTGGGTACTCCTGGAA
GGGTTAAGGACCACATTGAAAGGGGAAATATTGATTTCGGGTCTTTAAAGTTCCGTGTTCTTGATGAAGTCGATGAAATGTTAAAAATTG
GTTTTGTAGATGATGTCGAATTTATTTTAGGCAAGGTCGAAGATGCAAGCCTAGTTCAAACCGTTCTTTTCAGTGCCACTTTGCCAGTCT
GGGTGAAGCATATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTGTTGGTAATGAGAAAATGAAGGCCAGTAAAAATG
TGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTGATTCCTGATATCATTCGGTGCTACGGCAGTGGAGGCCGCACAA
TTATTTTTACTGAGACAAGGGCGCTAGCTTCAGAGCTAGCTGGCTTATTGCCTGGGGCAAGTGCTTTGCATGGGGAGATACAACAGAACC
AGCGTGAGGCTACACTTAAAGGATTCAGATCAGGAAAATTCATGACATTAGTGGCCACAAATGTAGCAGCCCGTGGATTGGATATCGATG
ATGTTCAGTTAATTATCCAGTGCGAAGCCACTAGTGATGTTGAAGCATACATTCATCGATCTGGAAGGACAGGACGGGCAGGAAAGAGTG
GTGTGGCTGTAATGCTGTATGATCCAAGGAAGTCCAACATTTCTAGAATTGAAAAAGAATCTGGTGTGACGTTTGAGCATTTATCTGCTC
CTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGGATATTTCCGATAGTGTCATACCTGCATTTAAGG
ATGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGCTGGCTATTCTGAGA
TCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGTGTGGGAGACCCATCTTCTCACCTTCCTTTGTCT
ATAGTGTCCTGAGGAGGTTCCTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTACTTTGACAGCTGATGGAAAGGGGGCAGTTTTTG
ATGTAGCTGCTGAGCACTTGGATGAATTTCTCTCAGGCCACAAAACTGCACATGGGGTAAATTTAGAGGTAGTGGAAGCGCTGCCTCCTT
TGCAAGAGAGAGAGAAGCCAAGAGGTAGATTTGGAGGTGGTGGCCGTGGTGGTGGCTTCGGTAACAGAAGAGGTGGAGGTGGCTTTTCTG
GAGGAAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGGCGACACAATTTTTGACAGCTGGACAATACAAGAGTTTGTCCACGG
CTGCTTTCAAAATTTTGGTATAGCGAAGAAAATGTACGAGACGTCAGTATTAATTTTACTAATTTATATATAGGTTTCTCCTCCCTGTAC
CCTGCTTCATTCTGCTTTTCCCTAGTTGGCTTTCTTGTAGGGAAACGAATTGTAGTGTTCTTGGTTTTACGGTTTGTTTGGTTAGACACT
TCCCAAGTTACTATTTTTTTGTATGGTATTATTACCTGAAGAAATCAGATTCGATTCAATCCGCAGATTTTATAATCCGCAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	4
Solanum tuberosum	IVROOT	Root	5850	7
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	8
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (52)

Alignment image suppressed for unigene with 52 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	57686	ATP_RecQ DEAD_box Helicase_C Cas3_core DEAD RecQ Aldehyde_dehydr	11
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	130340	ATP-dependent helicase DEAD-box - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) GUCT - Molecular Function: RNA binding (GO:0003723) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: nucleus (GO:0005634) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U243867	Solanum tuberosum #3
SGN-U259286	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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