Sol Genomics Network

Unigene SGN-U269018

Unigene Basic Information

Unigene ID:	SGN-U269018
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269018
mRNA sequence:	Length: 2294 bp

>SGN-U269018 Solanum tuberosum #4 (54 members)
CTCGTTCCTCTCTTCTATAACCTTTAACAATTTCTCCAAATCCGTAGATCTTACGAATTCAAAGATGGTGTCGGATGCGGCGAAGAAGAG
AGATGCGCAGAAGAAGGCGGCAGCAGCTGCTAGAAGAGGAGGTAAAGGTGCGGCAGCGTCTAAATCGGCTGCGACGGCGTCTAAATCGGC
GGGGGAAAGTAACGGGGTTGATAATTTGACGAACGGAGTAGGGGATCTACAGATATCTGATCGGACTTGTACGGGTATTTTGTGTTCACA
TCCGCAATCAAGGGATATTAGGATAGAATCATTATCAGTCACTTTCCACGGACATGATCTAATCGTTGATTCTGAACTGGAGCTCAACTA
TGGCCGACGTTATGGTTTGTTGGGATTGAATGGCTGCGGGAAGTCTACTCTTCTTACCGCTATAGGGTTGAGGGAAATTCCCATCCCAGA
CCACATGGATATTTTTCATCTTTCTCGGGAGATTGAAGCCTCTGACATGACCTCTCTCGAGGCCGTCATTAATTGTGATGAAGAGAGGTT
GCAATTGGAGAAAGAAGCTGAAGCTTTGGCTGCACAGGATGATGGTGGTGGAGAGCAACTTGAACGGATCTATGAGCGTTTAGAAGCTAT
GGATGCTGCCACTGCTGAGAAACGTGCTGCTGAAATCTTGTTTGGGCTTGGATTTGATAAGAAAATGCAAGCAAAGAAAACACGCGATTT
TTCAGGTGGCTGGAGAATGAGGATTGCTCTTGCCCGTGCCCTCTTTATGAATCCAACAATTTTGTTGCTTGATGAGCCAACAAACCATCT
TGACCTAGAAGCCTGTGTGTGGTTGGAAGAATCCTTGAAGAACTTTGAGCGCATTCTGGTTGTCATTTCACACTCACAGGATTTTCTCAA
TGGTGTGTGTACCAATATCATCCACATGCAAAACAAGAAGTTGAAACTCTATACAGGTAACTACGACCAATATGTGCAAACCCGTTCAGA
GCTGGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTTCTGCAATGAAGGAATACATAGCTCGCTTTGGGCATGGTTC
AGCTAAACTAGCCCGTCAAGCACAGAGTAAAGAGAAGACATTGGCTAAGATGGAGCGTGGTGGGCTTACTGAGAAGGTGGGGAGGGACAG
CGTCCTGGTTTTCCGGTTTACTGATGTCGGCAAACTTCCTCCTCCAGTTCTACAGTTTTCTGAAGTTGCTTTTGGCTACACACCTGATAA
CCTCATCTACAAGAACCTTGATTTTGGTGTAGATCTCGACTCCAGGGTAGCACTTGTAGGGCCTAATGGAGCTGGAAAGAGCACACTGCT
TAAGCTGATGATAGGGGAGTTATTTCCCACTGATGGCATGGTTAAGCGGCATAATCACCTAAAAATTGCACAGTACCACCAGCACTTGAC
TGAGAAGCTAGACATGGAGGTGTCGGCTCTTTTGTACATGATGAGAGAGTACCCTGGGAATGAGGAGGAGAAGATGAGGGCAGCAATTGG
GAGGTTTGGACTCACAGGTAAAGCTCAAGTAATGGCTATGAAGAACTTGTCAGATGGTCAACGTAGTCGGGTGATCTTTGCATGGTTGGC
TTTTAGACAACCCCACATGCTGCTGTTGGATGAGCCAACCAACCATCTTGATATTGAGACCATTGACTCACTTGCAGAGGCCTTGAACGC
ATGGGATGGTGGGATGGTTCTAGTGAGTCACGACTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGAAAATCAGGCTGT
GACACGATGGGAGGGTGGCATCATGGAGTTCAAGAAACACTTGAAGAAAAGGGCTGGATTGGGTGATTAAAAGTAAGATCTCTGTGTTAT
ATTAGAAAGTGTGATGGTATCACTATTTCCTCTTGGTGGTTCAGTGCCAAGGCGTAATGGTGAAACATCAGCAGGCTCCCATCACGGTAG
CTGAGGGGAGAAAGTAAAGGCTTCTTGATCACCAGTAAGACCTAAGTAACGTTAGCTAAGACCACACCTGGTGCTAGAGAGAGAGTAAGT
GATCGAACCATGGTCACCGACTGTTTGAACTCTGGTTATTGTTTGGGCTTAGTCCACTATTTTTGTCGTCCATTTTACTCTAATTACATA
TTACCCTAGGTTTTGGAGAGCATACATTACAGCTTATTCCTTATGTCATTTCTATTCTATATCATTGCTATGATGTACTTCGGATTTTGG
AATTCTGAAAGCTATTATGGATTTTTTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	8
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (54)

Alignment image suppressed for unigene with 54 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	22352	ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter CcmA ProV IISP Sulph_transpt1 ABC_bact_transpt Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	33
5	57052	ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter Ag_transporter2 CcmA ProV IISP Sulph_transpt1 ABC_bact_transpt Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	17
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118764	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	31
5	130183	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U243946	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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