Sol Genomics Network

Unigene SGN-U269032

Unigene Basic Information

Unigene ID:	SGN-U269032
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269032
mRNA sequence:	Length: 1607 bp

>SGN-U269032 Solanum tuberosum #4 (34 members)
AGAACTAGTGGATCCCCCGCGGNCTGCATGGCACAAGCGACTCTCCTCCCTCCTTTTCCTTCTTCTAAAAACATCAACTATACAGAGAGA
ATTTTTCTGTGGAAAATGGCAGGGAGGGTAGATCTAGACGGCAATCCGATCAAGCCGATGACGATTTGCATGATCGGCGCCGGTGGCTTC
ATTGGCTCCCACTTATGCGAGAAGCTCATGTCGGAAACGCCGCACACGGTGCTCGCCGTCGACGTTTACAGTGATAAAATCAAGCATCTA
CTTGAACCGACTTCTCTACCTTGGAATGGAAGGATACAGTTCCACAGAATTAACATTAAGAATGATTCTCGCCTTGAAGGACTCATCAAA
ATGGCAGATCTGACTGTAAATCTTGCTGCGATCTGCACTCCAGCTGATTATAATACACGTCCACTTGACACAATCTACAGCAACTTCATT
GATGCTCTACCAGTGGTTAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTTTCCACTTGTGAAGTGTATGGGAAAACCATAGGT
GCCTTTTTACCCGAAGACAGCCCATTGCGGCAGGATCCTGCTTATTTTGTTCTTTCGGAAGAGGCATCTCCATGCATTTTTGGACCTATT
GAGAAGCAAAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTGAGAGATTGATCTATGCTGAGGGTGCTGAGAATGGCTTAGAATTCACC
ATTGTTAGGCCCTTCAATTGGATTGGCCCCAGGATGGATTTTATACCCGGGATCGATGGTCCTAGTGAAGGTGTTCCAAGAGTATTGGCT
TGCTTTAGTAATAACCTATTAAGACATGAACCACTAAAACTAGTGGACGGTGGACACTCGCAGAGAACCTTCATATATATCAAGGATGCT
ATTGAAGCTGTATTCCTGATGATTGAAAATCCTGCACGGGCCAACGGCCATATCTTTAACGTTGGCAATCCTAATAACGAAGTTACTGTC
AAGCAGCTAGCTGAAATGATGACTCAGGTGTACTCAAAGGTGAGTGGAGAAACTCCTCTTGAAACACCCACCGTCGATGTAAGTTCTAAA
GAATTTTATGGCGAGGGGTATGATGACAGTGACAAGCGAATTCCAGACATGACCATAATCAACAGACAGCTCGGTTGGAACCCAAAGACA
TCCCTATGGGACTTGCTTGAATCCACACTCACTTACCAACATAGGACATACGCTGAGGCTGTCAAGCAGGCGATGTCAAAGACAACAGCA
AATTGAATGAAGTCGGAGCAGAGCTTTACTGTGTGTAATCTTCATCTACTCGGTTCGACTTCATCCACGTTATTTATTCTCTTTGTCATC
CTCTTCATGCAAACCTATAATAGGTGACAACAGATTCATTATGAAATTATGCCTTAGCTACAACAGTTTTTGACGCATTATAGTCAAAAG
AAGCCTGGAGTCTGCTCATGATTTTGTTGTCATTATATTATCATTCTACTGTAATGGAAGTATGTTGTATCATTACACATATTTTCCTTA
TCTAATTACTAGTATAAAGTATAATTTATTTGTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
uaxs	UDP-apiose/xylose synthase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	4
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	22865	dTDP_gluc_dehyt GalE Epimerase_Dh 3Beta_HSD	18
5	57006	dTDP_gluc_dehyt GalE Epimerase_Dh 3Beta_HSD	18
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	119284	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	17
5	129634	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U243809	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer