Sol Genomics Network

Unigene SGN-U269067

Unigene Basic Information

Unigene ID:	SGN-U269067
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269067
mRNA sequence:	Length: 1772 bp

>SGN-U269067 Solanum tuberosum #4 (42 members)
CCTCGTGCCGAATCGGCACGAGGGCCAAATGGAGGGTCCTTAGTTTTTTTTCTCTCTCTCTTTCTGCTACCAAAAAATAGCCTCACTACT
CCACCATCATCTTCTTCTTCTTCCTTCTTCTCTTACTGCTGCAAATAAGCTTTTTGTTACTTGGGTTTTCTCTTACAACATCAAATTTAC
AACTTTGGTTCTCACAGAATTATTAGAGTGATTTGTAACTGTGATGTCTCCGCCGCTCCTTGGTGTTGGGGAGGAGGAGGGCCAGAGTAA
TGTAACTCTACTGGCTTCTTCGACTTCCTTAGGAAGCATATGCAAAAAAGGATCAGCTCTTAAAGAGCGAAACTATATGGGTCTATCTGA
TTGTTCGTCGGTGGACAGCTGTAATATTTCCACCTCATCAGAGGACAATAATGGGTGTGGATTAAATCTCAAGGCGACGGAGCTCAGGCT
CGGTCTCCCTGGATCCCAGTCTCCCGAAAGAGGCGAGGAGACTTGTCCTGTGAGCTCGACAAAGGTTGATGAGAAGCTGCTCTTCCCCTT
GCACCCTGCCAAAGATACTGCTTTCTCGGTATCGCAGAAAACAGTAGTTACTGGCAATAAACGAGGATTTTCAGACGCTATGGATGGATT
CTCAGAGGGAAAATTTCTGTCGACTTCTGGTGTGAAAGCAGGTGATACAAAGGAGACCTCACGTGTGCAACCACCTAAAATGAAAGATGC
TAATACTCAGAGTACAGTTCCTGAGAGGCCTTCTGCTGTGAATGAGGCCTCAAACCGTGCAGGCAGTGGTGCCCCTGCTACAAAGGCACA
GGTTGTTGGTTGGCCACCCATTCGATCTTTTAGAAAGAACACACTAGCCTCTGCCTCAAAGAACAATGAAGAGGTGGACGGAAAAGCTGG
CTCACCAGCTCTTTTCATTAAGGTCAGCATGGATGGTGCTCCCTATTTGAGGAAAGTGGACCTCAGAACCTATTCTGCATACCAGGAGCT
CTCTTCTGCTCTTGAAAAAATGATCAGCTGTTTTACTATAGGTCAATATGGATCTCATGGAGCTCCTGGGAAGGATATGTTAAGTGAGAG
CAAATTGAAGGATTTGCTTCATGGATCTGAGTATGTTCTCACTTACGAAGATAAGGATGGGGACTGGATGCTTGTTGGTGATGTACCTTG
GGAGATGTTTATTGACACTTGCAAGAGGTTGAGGATCATGAAAGGTTCAGATGCCATTGGCCTCGCCCCAAGGGCTATGGAAAAGTGTCG
GAGCAGAAATTAGCCTATCTACACATGATTAAAGCTATCCATCCAGCATTACTATTAGGCGAGGCAAACACAAAACGGGTGAAGAGCTCA
TAAACTTGAATCCTTTTTAAAGGCATGAACAGTAGCTGGTTGTTGGTCTTGGATAGCTCAGCATGGGTAGATGCTTTACCTGATTACGAC
ATGGTGTTTTTTAATATTTGCGTAATATATGTCCTCGTTAAGTTTTTATCTTGTCTATTTAAAAAAGCACTTTGATATTGGAGTTTGTCT
GCAAAGTGCAAACTAATGTGTGTTGTGTACTGAGAGCTCTTCTAGAGGTAATTTAGTAATGTTTCAAGTGTATTGCTTATTTAAGTTCCC
TTAAGTGTGTACTTTAGACCCAAAGTTTGTCGTTTGATTTAAGTATGTGTGTGCTCTTCAGAAATTGTTATTACTGTATGAATAAATGTG
TCCTCCACATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
IAA	Aux/IAA protein	Auxin transcriptional regulator
iaa4	auxin-regulated IAA4

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	11
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	35	AUX_IAA	280
2	22040	AUX_IAA	103
5	56303	AUX_IAA	94
1.1	101391	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983)	341
2	118483	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	92
5	128999	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	71

Preceding Unigenes (1)

Unigene	Build
SGN-U243911	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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