Sol Genomics Network

Unigene SGN-U269084

Unigene Basic Information

Unigene ID:	SGN-U269084
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269084
mRNA sequence:	Length: 1890 bp

>SGN-U269084 Solanum tuberosum #4 (51 members)
CGCCGTTAAACTTAACGCCGTTATTTCTCTCCACCTAACTCCTCTGTTTCCCTCCTATAAATCCTCACACTTAACATTCATGATTCTTCA
GCAGTACAAAAATACCCATTTTCCTCAATTTTTCTCCAAAAGAACTCAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCT
TTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTT
TGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAAT
GGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAG
AAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAAATGAGGAGGATTAT
GACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAA
AAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAG
GAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAA
CTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATT
CAAAGACTACTTTGTTGATGAAAGAAAGAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCT
TGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTGCAATCGAAACAACATTGTG
GTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGG
AGTGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCT
TTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCT
AGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAA
CGACTTCAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACG
TTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGACAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTACACATTTT
GAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAATTAATTATGATTGTTGTTTGTTTGTGTAAACC
TTTTAAGTTTGACAGAAAACATTCTTCTTTTTCTTATGTCTTATAAAAGTCTTATTGGACTAGATTCATTACAAGTTTTACCTTTCTGAT
GTAAAAAAATTCTTGATGCACCAATGGTAATTTGGCTTTCTTGACAAAAAAAAAAAGTGGGATAAAGGTCTTCGCTTTGACTTTTACAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ341174	cinnamic acid 4-hydroxylase	cinnamic acid 4-hydroxylase

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	3
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	10
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (51)

Alignment image suppressed for unigene with 51 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4	Cytochrome_P450	973
2	21973	Cytochrome_P450 EP450I	589
5	56256	Cytochrome_P450 EP450I	566
1.1	101365	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	908
2	118409	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	540
5	128928	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	519

Preceding Unigenes (2)

Unigene	Build
SGN-U243826	Solanum tuberosum #3
SGN-U243827	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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