Sol Genomics Network

Unigene SGN-U269115

Unigene Basic Information

Unigene ID:	SGN-U269115
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269115
mRNA sequence:	Length: 1674 bp

>SGN-U269115 Solanum tuberosum #4 (32 members)
GAAACCTATTTCCAAAGCCCTTTTCCTCCGCTCTCTTCTCAGTCACAGCTAATAGTCATGGGTCAAGGAACGCCCGGCGGACTTAACCGG
CAATTGCCCGGCGACCGGAAAAACGATGGAGACAAGAAGGAGAAGAAGTTCGAACCAGCTGCTCCACCGGCACGCGTTGGTCGGAAGCAG
CGCAAACAGAAAGGTTCCGAAGCGGCAGCTCGGATACCAGCCGTTACGCCGCTGACCAAGTGCAAGCTTCGTCTGCTAAAGCTTGAGAGA
ATTAAGGATTATTTGTTAATGGAAGAAGAATTTGTGGCTAATCAGGAACGGTTGAAACCTCAGGAAGAGAAGACCGAAGAGGATCGATCT
AAAGTTGATGATCTCCGTGGATCTCCAATGAGTGTGGGGAATTTGGAGGAGCTTATTGATGAGAATCATGCTATTGTTTCGTCGTCTGTG
GGACCGGAGTATTATGTTGGGATCTTATCGTTTGTTGATAAAGATCAACTCGAACCAGGATGTGCTATTTTGATGCATAACAAGGTTCTA
TCTGTTGTTGGGCTTCTACAAGACGATGTTGATCCAATGGTGTCTGTCATGAAGGTTGAGAAAGCTCCCTTGGAATCATATGCTGACATT
GGTGGATTAGATGCCCAGATTCAGGAGATTAAAGAAGCAGTTGAGCTTCCTTTGACTCACCCTGAGTTATATGAAGACATTGGTATTAAA
CCTCCGAAAGGGGTAATTCTGTATGGAGAGCCTGGGACCGGCAAAACCTTACTTGCCAAGGCAGTCGCAAACTCCACTTCAGCAACTTTC
CTGCGTGTTGTGGGAAGTGAACTGATTCAGAAGTATTTGGGAGATGGGCCTAAATTGGTCAGGGAGCTCTTCAGAGTTGCTGATGATCTC
TCACCTTCAATTGTCTTTATTGATGAAATTGATGCAGTTGGTACAAAAAGGTATGATGCACACTCAGGTGGTGAACGAGAAATTCAGAGG
ACTATGTTGGAGCTGCTGAACCAGTTAGATGGTTTTGATTCCAGAGGAGATGTGAAGGTGATTCTTGCCACAAATAAAATTGAGAGTCTG
GATCCGGCCCTGCTTCGGCCTGGTAGGATAGACAGGAAAATTGAGTTCCCTCTTCCTGATATCAAAACAAGGAGGCGCATTTTCCAGATA
CACACAGCAAGGATGACTTTGGCTGATGATGTAAATTTAGAAGAATTTGTTATGACGAAGGATGAGTTTTCGGGTGCTGATATCAAGGCA
ATATGTACCGAAGCTGGATTGCTCGCTTTAAGAGAGCGGCGTATGAAGGTAACTCATCCAGATTTCAAGAAGGCCAAGGACAAGGTCATG
TTCAAGAAGAAAGAGGGAGTGCCTGAAGGGCTTTACATGTAATCATTTTGTATCACTGTTGTTCTCGACTTGATTTCCCTGTTTTCAGTT
CTCTTTAAATACGTTGACGTTTTTTGTTTCCTGGTTAAAACAATATATTACATTGAGGGGTCGTTTGGTACAAATATTGATAACGCAGGG
ATTAGTAATGTAGGGATTAGTAATGCAGGGATTAGTAATGCAGGGATTAGTAGTGCAGGGATTATTTTTTGTCAAGCGTTTGGTTCATTG
ATTCTCACTTAATCTTGTGTTTGATTTAAAACTCTACAAAAAAAATCTTTCCTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	21987	26S_p45 AAA_ATPase_centr	260
5	56300	26S_p45 AAA_ATPase_centr Pept_M41_FtsH	102
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129543	26S proteasome subunit P45 - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: protein catabolism (GO:0030163) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243965	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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