Sol Genomics Network

Unigene SGN-U269132

Unigene Basic Information

Unigene ID:	SGN-U269132
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269132
mRNA sequence:	Length: 1393 bp

>SGN-U269132 Solanum tuberosum #4 (25 members)
CACCCCTCTTCCTTATTCTCTCTGTAATCAAACAACTCCAACAATGGCAACAGCGATGGTTCTCGACCCGAAACCCGCCGAGAAACTTCC
GGCAACCCGGACGGAAACCTCCATCACCGACGTTCCTTCCGATGGAGAAGATGACTTATACGCTCGCCTGAAATCACTTCAACGGCAACT
CGAATTCATCGAGATCCAAGAGGAATATGTTAAGGACGAGCTCAAAAACCTCCGACGAGAACATTTACGGGCACAGGAAGAAGTCAAACG
GATCCAGTCGGTGCCGTTAGTAATTGGACAGTTCATGGAGATGATTGATCAGAATAACGCTATTGTAGGTTCAACTACGGGTTCTAATTA
CTATGTTAGGATACTAAGTACGATTAATCGAGAGCTTCTTAAGCCGTCGGCTTCTGTGGCTTTGCATCGCCATTCAAATGCGCTTGTTGA
TGTTTTGCCACCTGAAGCTGATTCCAGTATTTCGCTGCTTAGCCAATCGGAGAAGCCTGATGTTACTTACAATGATATTGGAGGTTGCGA
CATACAAAAGCAGGAAATTCGTGAAGCTGTTGAGTTACCTCTAACTCATCATGAGTTGTACAAGCAGATCGGTATAGATCCTCCCCGGGG
TGTGTTGCTCTATGGTCCACCAGGCACTGGGAAAACTATGCTTGCAAAGGCTGTTGCACATCATACCACCGCAGCCTTCATAAGGGTGGT
TGGCTCAGAATTTGTTCAGAAGTACTTGGGCGAGGGTCCACGAATGGTTCGTGATGTCTTCCGCCTTGCCAAAGAAAATGCTCCAGCAAT
CATTTTTATTGATGAGGTTGATGCAATTGCTACTGCTAGGTTTGATGCTCAGACTGGAGCTGATAGAGAGGTCCAGCGTATCCTCATGGA
GCTACTAAATCAGATGGATGGGTTTGACCAAACAGTGAATGTGAAAGTTATTATGGCAACCAATAGAGCCGACACACTGGACCCTGCACT
TTTACGTCCTGGAAGGCTTGATCGTAAGATTGAATTTCCGTTGCCTGATAGACGTCAAAAAAGGCTCGTTTTTCAGGTATGCACGGCTAA
GATGAACTTAGGTGATGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATCAGTGCTGCTGAGATTACGGCTATCTGTCAAGA
AGCTGGTATGCATGCAGTGCGCAAGAATCGATATGTCATCCTTCCAAAGGACTTTGAAAAGGGTTACAGGACGAACGTGAAGAAGCCTGA
CACTGACTTTGAATTCTACAAGTGATTGTTGTTAAAGGCTAAGCAAATACTTATTATGACATCTACTATGTAAGCCCTGTATGGTTTCTT
TTGTAGTTCTGAACTGTTGTGGAGTATTTAGTGGCTGTTTCTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
potatp1	POTATP1

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	21987	26S_p45 AAA_ATPase_centr	260
5	56300	26S_p45 AAA_ATPase_centr Pept_M41_FtsH	102
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129543	26S proteasome subunit P45 - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: protein catabolism (GO:0030163) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243794	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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