Sol Genomics Network

Unigene SGN-U269161

Unigene Basic Information

Unigene ID:	SGN-U269161
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269161
mRNA sequence:	Length: 1530 bp

>SGN-U269161 Solanum tuberosum #4 (46 members)
AAAGAGAGAGAACAGATACTCTACTACTTCTCTCTCTCTTTCTGCCGGAATTTAAATCGGAAGATCAAACAAATGGCCGACGAACCTGCG
TTGACTCGATGGACATTTCCGTTTGGGAGGAGGAAGGTTCCTGCACCAGATGCATCTGAGAATGGTGATTCTGTACAAAATGGAAATGGA
TCTGTGCGGAACACTGCAGAATTATCCATTTTCGAGCAGTATAATCAGGCTAATGGAGGCTCAACACACTCTAATGGAGTTCAGTCTGCC
GGAGTGGATGGAAAACCGCAAAAATCTCTACTTCCTCCTTTCGAGTCTGCAGAAATGCGCACTTTAGCAGAAAGCTTAACCAGGGATATT
CTTCGTGGTAATCCAGATGTTAAGTGGGAGAGCATTAAAGGATTAGAGACTGCGAAGCGTCTACTAAAAGAAGCAGTTGTCATGCCTATT
AAATATCCAAAGTATTTTAAAGGTCTTCTAACTCCTTGGAAAGGTATCCTCCTTTTTGGCCCTCCCGGAACAGGAAAGACCATGCTTGCG
AAGGCAGTTGCAACTGAATGCAATACCACATTTTTCAATATCTCAGCATCATCAGTTGTCAGCAAATGGCGTGGTGATTCTGAAAAATTG
ATCAAAGTGCTATTCGAGCTCGCCAGGCATCATGCACCTTCAACCATCTTTCTCGATGAAATTGATGCCATTATCAGTCAACGTGGGGAA
GCGCGCAGTGAGCATGAATCTAGTAGGCGTTTAAAAACAGAGCTGCTCATACAGATGGACGGTTTGAATCGGACAGATGAACTTGTCTTT
GTTCTGGCGGCAACAAATCTTCCCTGGGAACTGGATGCAGCAATGCTCCGACGTCTTGAGAAGCGGATCCTTGTGCCCCTTCCGGAGGCA
GAAGCAAGGTGCGGGATGTTTGAGGAATTACTACCATCCCTTCCTGAAGAGGCGCCACTTCCATATGATTTATTGGTAGAAAAGACAAAA
GGCTTTTCCGGTTCTGATATTCGGCTATTATGCAAGGAGGCTGCCATGCAACCATTACGATGTCTAATGGCAGAACTTGATAAGAGGGAA
GAATTGGTGCCTGAGGATGAGTTGCCCAATGTTGGACCAATAACTGTGACAGATATCGAGATGGCACTGATGAACACCAGACCATCTGCA
CACCTCAATGCACCTAGGTACGATAGGTTCAATTCAGATTATGGCAGCCATGCTCTCCAGTGAAGGCACCCCGATGTATCCTCTCATTTC
TGCTGTTGTCCTCAGATCTATTCAGCAATGTGCCAACACAGATGTTAAGTTTTTAAAACCTGTGTTTGTAAAATGTATGACTCTCTTGTG
TTTTGAGCAATTTATCTTTAGTGTGCTCAATTTTCATTCATGTTGTTCTTCTATGGACTATGTTCTTTCACAACTGGAAACATCGTTCTT
TCTTTCTTTTAGGCTTATTATGTTTCTCCTATAGAAACTCTATCGTAATGAGCATTTAAAAATGTTCGTATTATTACCAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	14
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	11
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (46)

Alignment image suppressed for unigene with 46 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	21987	26S_p45 AAA_ATPase_centr	260
5	56300	26S_p45 AAA_ATPase_centr Pept_M41_FtsH	102
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129063	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	49

Preceding Unigenes (1)

Unigene	Build
SGN-U243806	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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