Sol Genomics Network

Unigene SGN-U269166

Unigene Basic Information

Unigene ID:	SGN-U269166
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269166
mRNA sequence:	Length: 2267 bp

>SGN-U269166 Solanum tuberosum #4 (43 members)
GTCATCCTTCATCTGCTATAACCCTTGGCCAACGACCTCCGCCGCCGGAAAATATCTACATCTCCGGCCACCGACGGATTTGTACAATAA
CGTATTTAATCTTCATTATACATCTGAACGTAGGAAATGGAGGTTCTTCGGTTTACCGCCGTGAAGTCATTGAATTCCTGCGTCCGTCCT
GAATTCACGGCGACGAGTTCCGTCATTGTTCCTTTTAACACTGTGAAAGTTTCCGGAACGAGGAAAAGCAAAAAGAAGGCGTTCATTCGT
GCTAAGGCGACGGAGATCTTGTCATCGCCAGCTACGGTAACGGAACCGTTGAAGGCGGAGCCGGTTGAGGCACCGGAGGCTCCGGTTCCG
TTGCTACGAGTTTCTCCGAGCTCGTTGCAGTGTGAGCCGGGATATTTGATACCGAATACTCCGGTTTTAGGTACTGGTGGTGTGTCCGGG
TATGAGTATTTGACAAACATCTTGTCATCGAAAGTTTATGATGTAGCTTATGAGACGCCTTTGCAGAAAGCTCCTAAGCTGTCAGAAAGA
TTGGGAGTTAATGTATGGCTTAAAAGAGAGGATCTTCAGCCGGTGTTTTCGTTCAAAATCAGAGGAGCTTACAATATGATGGCAAAACTC
CCTAAAGAGCAGTTGGAAAAAGGGGTTATATGCTCATCAGCTGGAAACCACGCACAAGGTGTTGCATTATCTGCTCAGAGACTTGGCTGT
GATGCTGTGATTGTTATGCCTGTTACTACACCAGACATCAAATGGAAATCAGTTAAGAGATTGGGTGCTACTGTTGTTCTTGTTGGGGAC
TCATATGATGAAGCTCAAGCATATGCCAAAGAGCGGGCTGAAGCTGAAGGCCGCACATTCATCCCTCCTTTTGATCACCCAGATGTCATC
GTAGGGCAAGGTACAGTAGGGATGGAGATAAATCGCCAACTCAAAGATAACATTCATGCAATCTTTGTTCCTGTTGGAGGAGGGGGGCTT
ATAGCTGGTATTGCTGCTTATTTAAAAAGGGTTGCCCCAGATATAAAGATTATTGGAGTTGAACCACTTGATGCAAATGCGTTGGCATTA
TCATTACAGCATGGTCAGAGAGTAATGCTGGACCAAGTTGGGGGTTTTGCAGATGGTGTAGCTGTTAAAGTGGTTGGTGAAGAGACTTAT
CGTCTCTGCGAGGAATTAATAGATGGCGTAGTCCTAGTTGGTCGTGATGCTATATGTGCATCAATAAAGGACATGTTTGAAGAGAAAAGG
AGCATACTAGAGCCTGCAGGTGCACTTGCTCTTGCTGGAGCCGAGGCATACTGCAAGTATTATGGCCTCAAGGGTGAAAACGTAGTAGCA
ATAACTAGTGGAGCCAACATGAACTTTGACAGGCTTAGATTGGTAACAGAACTCGCAGATGTTGGTAGACAGCGGGAAGCTGTTCTTGCT
ACTTTTATGCCAGAAGACCCAGGAAGCTTCAAAAAGTTCGCTGAAATGGTAGGACCAATGAATATCACTGAATTCAAGTACAGATACAAC
TCTGATAAAGAAAGAGCTCTTGTACTTTACAGTGTTGGACTTCACACAATTTTAGAACTTGAAGGAATGGTGGAGAGGATGGAATCAGCA
GATCTGCAAACCATTAATCTTTCAGACAATGACTTGGTCAAAGATCATCTTAGGCATTTGATGGGTGGTAGAACAAATGTTCATAATGAA
CTTTTGTGTCGATTCACTTTTCCCGAGAAGCCTGGTGCTTTGATGAAGTTTTTAGATGCTTTCAGCCCACGTTGGAATATAAGTTTGTTT
CATTATCGTGCACAGGGAGATACTGGTGCAAATGTGCTAGTCGGGATCCAAGTTCCACAGGATGAGGTAGTTGAGTTTGAGGGACGGGCA
AACAATCTTGGTTATGAATATGCAGTGGAGAGTCTCAATGAGGCATACCAGCTCATAATGCATTGAAAAAGGTGTTGCCTGTTTTGGCTT
GTTCTGGGACCTCATTGCAATGAAATAACGTGGTATTCGCCGACTTCACTTTCTCCTGGTTAGTCAGATATTCTGAATCCTCCTCGTCAA
TGGAAGATGCCTATTTCATAAACAACCAGTGAACTAGATGATTTTGGGCTAGTCTTTATCTTGTGTATTATCTAATGGCCTCTACTTCCA
TGAATAAACCATTTCACTTTAAAGCTAATATTAGGAGTTCTTTGTTCTGTTTCTATGTTGTGGATGCGTTGGAAGCCCTTAAATTAAGTA
TTTAATTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	7
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	10

mRNA member sequences (43)

Alignment image suppressed for unigene with 43 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	199	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthK	74
2	23195	Cysta_beta_synth Thi4 Thr_synthase Thr_dehydrateI Cys_synthM B6_enzyme_beta Cys_synthKM Trp_synth_beta S/T_dehydrtse_BS Thr_dehydrateII Cys_synthK Trp_synth_b_like Amcycprop_deam HTH_GntR ThrDh_C PyridoxP_deam	15
5	57504	Cysta_beta_synth Thi4 Thr_synthase Thr_dehydrateI Cys_synthM B6_enzyme_beta Cys_synthKM Trp_synth_beta S/T_dehydrtse_BS Thr_dehydrateII Cys_synthK Trp_synth_b_like Amcycprop_deam HTH_GntR ThrDh_C PyridoxP_deam	13
1.1	101578	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	70
2	119604	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14
5	129927	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243952	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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