Sol Genomics Network

Unigene SGN-U269188

Unigene Basic Information

Unigene ID:	SGN-U269188
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269188
mRNA sequence:	Length: 2323 bp

>SGN-U269188 Solanum tuberosum #4 (44 members)
CCCCACCGCAACACCTTCCTCAACTTCCTACTCCACTCTGTTCCTTTCCATTTTCAAGCCAAAAACGGCAATCCCAATTTCAAAATCGAC
CCATTTTCTTCAATCCAAATTCTCCTCCAAATCAATAATATGAAGGAAAAATACTAACAATCTTCACTTATTCTCATTATCAATGGCAAT
TCACACTTGTTTCTCACTAATACCTTCTTCTTTCTCTTCTACCAAATTGCCATTCCCCAAAAACACTACTTTTCAATCTCCTATCCCAAA
ATTATCTAGACCCACTTTCATGTTTGATCGGAAAGGTTCCTTTCAAAATGGCACCGCTGCCGTTCCTGCTGTAGGTGAGGATTTTCCGAT
TGATTATGCTGATTGGTTGCCAAAACGAGACCCAAACGATCGTAGAAGAGCTGGAATTTTGCTCCATCCGACGTCGTTTCCTGGACCTTA
TGGTATTGGTGACCTTGGCCCTCAGGCTTTTAAGTTCCTTGATTGGCTTCATCTTGCTGGTTGCTCCCTTTGGCAGGTTCTTCCACTTGT
ACCGCCTGGAAAGAGAGGCAATGAAGATGGATCACCCTATTCAGGACAGGATGCAAATTGTGGAAACACACTTCTGATTTCTCTTGAAGA
GCTTGTTGATGATGGTTTACTGAAGAAGGAGGAGCTTCCGGAGCCACTACCTACAGATCGTGTCAATTACTCGACTATATCTGAGATAAA
AGATCCTTTAATAACCAAGGCAGCAAAGAGGCTTCTCTCCAGTGAAGGGGAACTGAAAGACCAGCTCGAGAACTTTCGCCGGGATCCAAA
TATTTCGAGTTGGCTGGAGGATGCTGCTTATTTTGCTGCCATAGACAACTCTGTAAACACTATTAGCTGGTATGATTGGCCTGAACCATT
GAAAAATCGCCATCTTGCAGCTCTAGAAGAAGTTTATCAAAGTGAAAAGGATTTTATTGACATATTCATTGCACAACAGTTCTTGTTCCA
ACGACAATGGAAAAAAGTTCGTGACTATGCACGATCCAAAGGAATCAGTATAATGGGAGACATGCCAATATATGTTGGATATCACAGTGC
TGATGTTTGGGCCAACAAGAAACAATTTTTGCTGAATAGGAAAGGTTTCCCTCTTATAGTTAGTGGTGTTCCTCCAGACGCCTTTAGTGA
AACTGGTCAACTATGGGGCAGCCCTCTCTATGATTGGAAAGCCATGGAGAAGGATGGATTTTCATGGTGGGTATGCCGAATTCAACGTGC
AACGGATCTTTTTGATGAATTTAGGATAGATCACTTTAGAGGATTTGCTGGATTTTGGGCTGTTCCTTCTGAGGAAAAAATTGCAATTCT
GGGACGGTGGAAGGTGGGACCTGGAAAACCTTTGTTTGATGCTATCTTACAAGCTGTTGGGAAGATCAATATTATAGCAGAAGACTTGGG
AGTAATTACCGAGGACGTTGTTCAGCTAAGAAAGTCCATTGAGGCACCTGGAATGGCTGTACTCCAGTTTGCATTTGGCAGTGACGCTGA
AAACCCTCATTTACCTCACAATCATGAGCAGAACCAAGTAGTGTATACTGGAACACATGACAATGATACGATCCGAGGTTGGTGGGATAC
TTTGCCACAGGAAGAGAAATCCAATGTACTAAAGTATTTATCAAATATTGAGGAAGAGGAAATATCATGGGGCTTGATCGAAGGTGCAGT
TTCTTCTGTAGCCCGTATTGCAATTATACCGATGCAGGATGTTCTTGGGCTTGGGAGTGATTCCAGAATGAACATTCCAGCAACTCAGTT
TGGAAACTGGAGTTGGAGGATACCTAGTTCAACTAGCTTTGACAACCTGGATGCAGAAGCAAAAAAGCTAAGAGATATACTTGCAACTTA
TGGGCGGTTGTGATGATGAATGATGATTAAGATGTTATGTCCCCTGGGAATCAGGGGAGGACCTAGGCTGTAAGGACGTTCTCAGGCTTG
GGACACAAATTGCTGAGAGCATAAACGATCTAAACAAGGTTTTCCTGCCACAGTTCACCTCATTGCTGCAAAGGAACGCCTGCATTTTCA
ATTTTCTGAACTTTAGGCTCACTGGGGAAGCAGACAAGGAAAGCTAAAACGCGTGCTTTGGATTCTATTATTCTACATTAGCTGGTATAA
ACTACGAATGCTAGAGCCTTTCCATATTTATGCAGAAAGACTTCATAGTTTGAATGTCACCTGACCTAAAAATAAATAATGCATGTTTTT
GTATTTACTATTTGGTCGAAATAACACGAAAATTTCCTTCTTGTTCTGTCTTTCTTCCAGAAATATATGAATG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
dpep	X68664 4-alpha-glucanotransferase	4-alpha-glucanotransferase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	10
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	10
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1176	Glyco_hydro_77	16
2	24809	Glyco_hydro_77	7
5	60648	Glyco_hydro_77	5
1.1	101775	Glycoside hydrolase starch-binding - Molecular Function: catalytic activity (GO:0003824) - Biological Process: carbohydrate metabolism (GO:0005975)	38
2	121938	Glycoside hydrolase family 77 - Molecular Function: 4-alpha-glucanotransferase activity (GO:0004134) - Biological Process: carbohydrate metabolism (GO:0005975)	6
5	132133	Glycoside hydrolase family 77 - Molecular Function: 4-alpha-glucanotransferase activity (GO:0004134) - Biological Process: carbohydrate metabolism (GO:0005975)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U244125	Solanum tuberosum #3
SGN-U247380	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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