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Unigene SGN-U269215

Unigene Basic Information

Unigene ID:	SGN-U269215
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269215
mRNA sequence:	Length: 1131 bp

>SGN-U269215 Solanum tuberosum #4 (22 members)
CTCGAGTTTTTTTTTTTTTTTTTTTAACAACGAAAAGGAACTAATGATAACATTCTCCCAATTGAGTTCTCACAGCATTCAGAATTACAA
ACTAAAATAGAGAAATCAAAAGTACATCATATTTCTCCGGAGTTTCACCGGAGAATCAGAAATGGCGTTAATAGCTCGAAATGCGAAACT
GCTCACCGGAACGGCGCCGTTCCTTCAAAGGGCGGCGACGATCCACACGACACTCCCATCTCTCTCACAGCAACCTGCCTCTTCTCCGGC
CACTTACGGTGGCGCACAGCCTCCGTCCATGAATACACCAGCAGGGATATCTAAACCGGCTGAGTATGTGATATCTAAGGTCGACGATCT
GATGAATTGGGCTCGTCGTGGGTCCATTTGGCCCATGACTTTTGGATTGGCTTGTTGCGCTGTGGAAATGATGCACGCCGGAGCTGCACG
TTACGATTTTGATCGATTCGGTATTATTTTCAGACCTAGCCCTAGGCAATCCGATGTTATGATTGTTGCTGGTACACTTACCAACAAAAT
GGCCCCTGCTCTGCGCAAGGTCTATGATCAAATGCCTGAGCCAAGGTGGGTCATTTCCATGGGGAGCTGTGCAAACGGTGGAGGATACTA
CCATTACTCATACGCTGTCGTGCGAGGCTGTGATAGGATCGTCCCTGTTGACATTTATGTTCCAGGTTGCCCACCTACTGCCGAGGCTCT
TCTGTACGGAATTCTTCAACTGCAGAAGAAGATAAATAGGCGCAAGGATTTGCTTATGTGGTGGACCCAATAAGAGCCTTGTTTTTATGT
TTCCATCGATCTGTATGGAAATAAACGTTTGGCGAAGTACCATCCAAGGAAGAGAGATCTTCTTGTTTTTTCTTTTGGGTGAATCTTATG
GATCTCTCTTCTGGACCTTCTATGTTTCTTTTGTATGTTAATCTGATATTTAGTGGTACTCTCTAAGCTTAAGTTGGTATATCTCAATAA
AGCTGTTGTGCATCCTCTAAAAACTGAGGAATGGATTCAGATATTTTTTATTGTGAAGTGTAATTGATAGATTGAGAAGTGTTGTGCATC
TAATATTTTTAATATGCATGATAAGTGTGGAATCGATTTTTTTAATAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
psst	NADH-ubiquinone oxidoreductase	NADH-ubiquinone oxidoreductase

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	10	Znf_ring	594
2	23677	Cmplx1_20kDa Oxidored_q6	11
5	57937	Cmplx1_20kDa Oxidored_q6	10
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	120049	NADH dehydrogenase (ubiquinone) 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137) NADH ubiquinone oxidoreductase 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137)	11
5	131076	NADH dehydrogenase (ubiquinone) 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137) NADH ubiquinone oxidoreductase 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U244024	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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