Sol Genomics Network

Unigene SGN-U269242

Unigene Basic Information

Unigene ID:	SGN-U269242
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269242
mRNA sequence:	Length: 1193 bp

>SGN-U269242 Solanum tuberosum #4 (40 members)
CGGAGATATAAGGAGGACGAGGAGTCTTGTATAATACAACAAGTTATTTTACCCACCTCATGTTGGCTGTTGCGTGGTGGTTTAAAACAC
TCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTTCATTTCTTCCTTCTTCTTCTCCAAAAAAATCCCTAG
AAAATTCTCCATCAAATTCTAAGCAAAACCCATCAATTTTCTTTGCTTTCTGAGTATTATTAACCATGGCAGCTGTGTTCAAAACCCAGA
GTTCGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTGCTTGCTGTAGCTGTGGCTGTGAAGGGGAATTCAGAAGGGGATGCTTTGTACG
CCCTCCGCCGGAGCTTATCCGACCCGGGTAACGTGCTTCAGAGCTGGGATCCGAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTT
GCAACGGAGATAATCAAGTCACTCGTGTGGACCTTGGCAACTCAAAGTTATCTGGTCATTTGGTACCTGAGCTTGGAAAGCTTGATCATC
TACAGTATCTGGAGCTTTACAAAAATAATATTCAGGGAACCATCCCTAAAGAGCTCGGTAACTTGAAGAGCCTTATTAGTCTGGATCTGT
ACAACAACAATATTTCGGGGACAATTCCTACTTCACTTGGAAAGCTGAAAAACCTTGTTTTCTTGCGTCTAAATGATAACAAGCTAACAG
GACCAATCCCAAGAGAACTTACTAGCGTTTCTAGCCTGAAAGTTGTGGATGTCTCGAATAATGATTTGTGTGGAACAATTCCCACTTCTG
GTCCATTTGAGCATATTCCTCTGAACAATTTCGAGCACAATCCTCGACTTGAAGGTCCGGAGTTGTTGGGACTCGCTACCTACGACACCA
ACTGCTCTTAGAGGCTTGACGAATAGCTTCAGAAGAAGCACACCACTTTTGTGGAAGTTTAACAAATTCCCCTCCCCTGAACCTTGTTTA
TTGTTGTACTTACAGTGTGTCCAAAGTTGTAACTCTAAGCAAAGGTATGGTGTATGTAGGTTATTACTAAGTTAAGGAATGTGTGTAAAA
CAATCTCTATACTGCTACCAACTGTTGATGTATTTCATATTTCAATGTCTAGTGAAATGGTTCAGTGGGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
lrr2	somatic embryogenesis receptor kinase leucine-rich repeat protein 2

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	IVROOT	Root	5850	5
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	5
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (40)

Alignment image suppressed for unigene with 40 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1	Prot_kinase	3744
2	21971	LRR	768
5	56254	LRR	702
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128926	Leucine-rich repeat	647

Preceding Unigenes (1)

Unigene	Build
SGN-U244048	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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