Sol Genomics Network

Unigene SGN-U269322

Unigene Basic Information

Unigene ID:	SGN-U269322
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269322
mRNA sequence:	Length: 1475 bp

>SGN-U269322 Solanum tuberosum #4 (39 members)
TTCAAGGTTTAATTCCTGTACACGGCAGCTGAGATTCCCATCTTTGTTGCAGTCGCTCTACTCCCCCAATTTGAACTCTCTCTCGGCGAT
CTCTTTCTCCGGCGAAGTCTTTCGGATTTAAGATCTGCTAGCTGTAACAATGGCGTCTTCATATCTACCTGCAACCACAGATTCACTAGC
TCAGGCTTCTGAGGCTACAACCCCATCTGAGGCTATCTCCATTCTCTACCGCATCCTTGAGAACCCTTCATCATCTTCCGAGGCCCTAAG
GATCAAAGAGCAGGCAATCTTCAATCTCTCTGACCTCCTAAGTCAAGAGAAGAGGGCTGAGGATCTCCAAAAGCTTCTCGTCCAGTTGCG
TCCCTTCTTCTCTTTAATACCCAAGGCAAAAACAGCCAAAATTGTTAATAAAGGAATTGTTGATGCGGTGGCTAAAATACCTGGCACATC
TGACCTTCAGATTACACTTTGCAAAGATATAGTGCAGTGGGCCCGTTCGGAGAAACGAACTTTCCTTCGTCAGCGGGTTGAGGCAAAACT
TGCAGCTCTTTTGATGGAAAACAAAGAGTATTCTGAAGCATTGACACTCCTTTCAGGGTTGATCAAGGAGGTGAGAAGATTGGATGACAA
GCTTCTTCTTGTGGAGATTGACTTGCTGGAGAGCCAGCTCCATTTCTCGTTGAGAAATCTTCCCAAAGCCAAGGCTGCACTTACTGCTGC
TCGAACAGCCGCCAATGCTATTTATGTCCCTCCAGCTCAGCAAGGTGCCATTGATTTGCAGAGTGGGATACTCCATGCAGAAGAGAAGGA
TTATAAAACTGCTTACAGCTATTTCTATGAGGCATTTGAAGCATTTAATGCCCTTGAAAATCCCCAGGCCTTATACAGCCTCAAGTATAT
GTTGCTATGCAAAATCATGGTCAGCCAGGCTGATGATGTTGCAGGAATAATATCAACCAAGGTTGGATTGAATTACCAGGGGCCAGAAGT
TGATGCAATGAAAGCTGTTGCTGATGCTCACTCCAAGCGATCTTTGAAGCTCTTTGAGACTGCTCTTCGCAACTTTAAGGCTCAGCTAGA
TGAAGATCCTATCGTCCATAGGCACCTCTCTTCGCTCTATGACACTTTAATGGAGCAGAATCTTTGCAGGTTGATCGAGCCTTTCTCAAG
AGTCGAGATTGCTCATATTGCTGAGTTGATTGAGTTGCCAGCTGACCATGTTGAGAAGAAGTTATCTCAAATGATATTAGACAAGAAGTT
TGCTGGAACTCTGGACCAGGGGTGCTGGATGCCTTGTAATTTTTGAGGACCCTAAGCAAGACGCAATTTACCCGGCTACATTGGAAACCA
TTTCAAAATGGGGAAAGGTTGTTGACAGTCTGTTTGTTAGATCTTCAAAGATAGTGGCTTTGAGTTTCAGATCCTCCATCTATGACTTNG
TATTTCCTGAGCTGCAAGCAGATACTGCTTTAAGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	8
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	6
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	983	PCI	19
2	24384	PCI	8
5	58424	PCI	8
1.1	101815	Proteasome component region PCI	35
2	121465	Proteasome component region PCI Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) PCI/PINT associated module	6
5	132317	Proteasome component region PCI Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) PCI/PINT associated module	5

Preceding Unigenes (1)

Unigene	Build
SGN-U243945	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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