Sol Genomics Network

Unigene SGN-U269403

Unigene Basic Information

Unigene ID:	SGN-U269403
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269403
mRNA sequence:	Length: 1542 bp

>SGN-U269403 Solanum tuberosum #4 (20 members)
ATTAAACAAGATTTCGCAAAATGTGTTAAAAAATTCCAATGGTTACAAATTTACCATAGTCTTTTTTTCCTATATTGTCCTTAGTATTAA
TTAGTATATCCTTCCAAAACTCAATCTTCACAAAGTTCTTCTCTTTTTGTTGCAATGGCTGCTACCAATGAAGTGATTGTAGCCATGGTG
CCATTCCCTGATTACAGCCATCTCAATCAGCTCTTCGTTCTTGCTCGTTTCATTGCGTCCCATAATATACAAGTACACTTCCTCTCCTTT
GTTGATGTGAACCGAGATTTGGAACTTCGCGTTCAAGATGATGTATGGGTCTCAAACATCCATTTCGACAACCTATTGAGACCTTCTTCT
CCAACAGATAAAGATGGTCGCGATGGAGAGCCTCCGATTCTAATGTTTCTGGAAAAACTCACGAAGCCCATTAATGAAATATGTGTTCAA
CTCTCTACTAAGGCAAGAAAATTAGTCATAATTCATGACCTTATAATGAGTGAACAAATAACGGATGTACATACATTGTTGAATGTCAAG
TCTTATATATTCCACACCGGATCGACATTTAGCAGATATTCTTCCCTCAAACAAACTATTCCTGACATAGTTGAGGATGACGATGATCAT
GTAAAATTGATCAAGCAAATGCAGGATGAGTTTCCATTGTTGGAGCCACATGAGAAATATTGTTTTCAAGTGGAGCTTGATGATGATCCG
CTTATGCATTACTCTGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACGAGATCTGGGAAGACACAAAAGG
CAAGATTGACATACTTGTTGCTGGCATTGGAACTGGTGGAACCATTACAGGAACAGGCCGATTCCTTAAAGAGCAAAATCCAAACATTAA
GATTATTGGTGTGGAGCCCACAGAAAGTAACGTTCTATCAGGGGGCAAACCTGGCCCTCACAAAATTCAAGGGATTGGAGCAGGTTTTAT
TCCAGGAAACTTGGATCAAGATGTCATGGATGAAGTGATAGAGATATCGAGTGACGAAGCTGTTGAAACTGCGAAGCAATTAGCGCTACA
AGAAGGGTTGTTGGTTGGGATTTCTTCCGGAGCAGCTGCTCTTGCTGCCATTCAGGTTGGGAAGAGACCTGAGAATGCAGGAAAGCTTAT
TGGGGTTGTATTTCCAAGCTATGGGGAACGATACCTCTCCTCTATTCTTTTCCAGTCAATACGAGAGGAATGCGAGAAAATGAAGCCAGA
ATTGTGAAGATCTTCCTTTTCTTTGAGCTATCTTCTGATTCTTAATAATGCTATCTGGCTTTTCTAGCTGCCACACTTTTGTTTGTTATA
TTTAGTTGGCTGCTGGTGTATACAATAGATCAGGTATTAAGATGGTTCTCATAACAAAGATTAAACAATCTCATCGATTCGGTTTGAGGA
TTTTTTATTTGAATTGATCATGAAATTTCCCTGCAAAAAAAGGAAAAAAAAAAAAAAACCCCATTTTAGATTGTAAAAACTCGAGGGGGG
GCCCGTACCCAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pcs	plastidic cysteine synthase	cysteine synthase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	199	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthK	74
2	22155	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthase_BS Cys_synthK	52
5	56417	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthase_BS Cys_synthK	45
1.1	101578	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	70
2	118619	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	43
5	129130	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	38

Preceding Unigenes (1)

Unigene	Build
SGN-U244179	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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