Sol Genomics Network

Unigene SGN-U269418

Unigene Basic Information

Unigene ID:	SGN-U269418
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269418
mRNA sequence:	Length: 2511 bp

>SGN-U269418 Solanum tuberosum #4 (36 members)
TGAGGTAGCTGAGTTCCGCAGACTAAACCCTAGCTCCTCCTTCTCCTTCACCCGTCGTCCCGCCGCTCTCTTTTCATAACCACATAACTT
AGCCCGTATTTTTTAGATCATTCTCCATAATCAGTAACACAATTAGATTATCGGAAAAGGCTTGGAGAGTGTATAAGGCTGCTTTTATCG
TCTCTTGCCCCAAGTGTAGCTGTTGGTGGATGCGTTCTTATTCATCTTCTATAGTTGAGGGCTAAGTTTTCTCTATGGCTTCCAGGAGTA
GCATCCGTCTTATTTCATACTCGGAAGAGATTATAAATGGTGAACCAATCTTTATTTCCTCTAACTGCTGTCCTATTAAAGCTCACAAAT
ATGAGCCTGCTGGACTTGCTTTTCACTCTGCTGCTCTTAGACTGATTGGGCATGTTGAGAAAGAAGACCCCAAAGATGGCAAAGAAGATG
TTCCTAATGACAAGGAACAGACATTTGCCTATTCATCAGAGTCATACAGCTCTAAGGGGAAAAAGAAGTCTTCTACCGGCGAAAAGGTAC
AAGATCATTATGCATTGTTAGGGTTGAGCAATCTAAGGTATCTTGCTTCTGAGGATCAGATAAGGAAGAGCTATCGTGATGCTGCATTGA
GGCATCATCCTGACAAGCTGGCTTCACTTCTTCTAGCTGAGGAAACTGAAGCTGCAAAACAAGCCAAGAAGGAGGAAATAGAAAACCACT
TCAAAGCTATTCAGGAAGCATATGAGGTTCTTATGGACCCTGTTAGAAGAAGGATTTATGACTCCACCGATGAATTTGATGATGAAATCC
CAACTGAATGTGCTCCACAAGATTTTTTTAAAGTCTTTGGACCTGCATTTTTAAGGAATGGTCGTTGGTCCGTCACCCAACCCATCCCTT
CATTAGGTGATGAGAATACTCCAATTAAAGAAGTGGATAGCTTTTATAATTTCTGGTACAGCTTCAAAAGTTGGAGAGAGTTCCCACATA
CTGATGAGTTTGATCTTGAACAAGCTGAATCTCGTGATCACAAGAGGTGGATGGAAAGGCAGAATGCGAAACTTTCAGAGAAGGCCAGAA
AGGAAGAAACCGCCAGGGTGCGTACACTTGTTGACAATGCCTACAGAAAAGACCCTAGAATCTTGGGAAGAAAGGAGGCGGAGAAAGCAG
AGAAGCAGAGAAAGAAGGAAGCTAAACTACTTGCAAAGAAATTACAGGAGGAAGAAGCAATTAGGATTGTTGAAGAGGAAAAGCGTAAGA
AAGAGGAGGAGGGAAAAAAAGCTGCTGAAGTTGCTTTGCAGCAGAAGAAGTTGAAGGAGAAAGAAAAGAAATTATTGCGAAAAGAGCGTA
GTCGTTTAAGAACCCTTGCTGCTCCTGTTTTGTCTCAGCGTTTGCTTGGGCTAACTGATGACGATGTAGAAGGTCTATGCATGTCACTTG
ACATTGAGCAACTGAGGAACTTATGTGATAAAGCCGATGGAAAGGGTGAGCTTGTTATCTCTGAACTTCTCAGGGGAGCACTTGGACATG
AACACAACCCAAAATATGAGAATAAAGATGAAAAGATTAAGTCGCAGCAAAATGGTTCTCTGGAGAGTAAAAAACAAGTTCCTCTGATGA
GCAGTGAGAAAAAGGAGAAACCTTGGAGCAAAGAAGAAATTGATCTTTTGAGGAAGGGGATGCTGAAATATCCTAAAGGAACTTCTCGAA
GATGGGAAGTTATTTCTGATTATATTGGTACCGCAAGGACAGTTGAAGAGATCCTGAAGGCTACAAAAACAGTTCTGCTCCAGAAACCCG
ACTCTGCTAAAGCCTTTGACTCCTTCCTTGAGAAAAGAAAGCCAGCACCAACTATTGTTTCTCCTCTTTCCACGAGGGAAGAAGTAGAGG
GAGTAGAAAATAGTAGCAAGCCTGAAAGTGGAAGTGCCAAAGTAGCTGATTCTCAGGAGACCCCTAGTCAAAACACAAACAGCCAGAACA
CTGATGACGCACCTGCAGCAAACGGAGTTTCTTCGAGTTCTGATTCAGACATATGGTCTGCTGTTCAAGAAAAAGCTTTAGTTCAAGCTC
TGAAAACCTTCCCCAAGGAAACCAGCCAGCGGTGGGAACGAGTTGCAACTGCTGTCCCTGGGAAGACCATGAACCAGTGTAAAAAAAAGT
TTGCATTACTCAAAGAGAATTTCAGGAACAAGAAAAGTGCAGTGTGAGGTTAGTGGTGCTTGAAACTGCTGAGTCTAGTTTTTTTTTTTA
TTTCCATCTTTTTATTGTTCAGGCAGCCGCAACAAGCTCACTCTTGAAATGCATTGTGACAACACACCCCAGTCCATTTTCAGTACCATT
TTTGTCATTAAGCAGTAGTATTTACATATCTACTATTCAGTACGGCATTGTGAAGTTACTATACTGGAATACATTAATATTTGATGGGAA
ATACCGATGATACCTAAAGTTATTTATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	25136	DnaJ_N E-MAP-115 Myb_DNA_binding	7
5	59145	DnaJ_N E-MAP-115 Myb_DNA_binding	7
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	121152	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072) Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	7
5	131393	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072) Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	7

Preceding Unigenes (1)

Unigene	Build
SGN-U244650	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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