Sol Genomics Network

Unigene SGN-U269493

Unigene Basic Information

Unigene ID:	SGN-U269493
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269493
mRNA sequence:	Length: 1813 bp

>SGN-U269493 Solanum tuberosum #4 (21 members)
CTTCCGATCACCATCTTCCTCTATTTTTCACAAAGAAATTTATCGGTTTCTTTGCTGGAACAAATCTTTCTTTGTGTCTGTGAAATCAAT
CTATCTGTGTTGTAGAAATGGCTTTGGCTTTCACTTCTTCATCTGCAATTCATGGGTCTTTGTCGTCATCTTCTTCTTATGAACAACCCA
AAGTATCCCAATTGGGTACCTTTCAGCCATTGGAAAGGCCTCAACTATTGTCGTCGACTGTTTTGAATTCTCGGAGGCGTTCGGCAGTGA
AGCCATTGAATGCTGAACCTAAGAGGAATGATTCAATAGTTCCGTCAGCAGCTACCATCGTGGCTCCTGAGGTAGGAGAGAATGTTGAGG
CAGAGGACTTTGAGAAATTGGCTAAGGAGCTTCAAAATGCTTCCCCTCTTGAGGTTATGGACAAAGCACTAGAGAAATTTGGGGATGACA
TTGCTATTGCTTTCAGTGGTGCTGAAGATGTTGCTTTGATAGAGTATGCACATTTAACTGGCCGACCATACAGAGTATTCAGCCTTGATA
CTGGGAGGTTGAACCCGGAGACATACCAATTATTTGACACGGTGGAGAAGCACTATGGCATTCGCATTGAATACATGTTCCCTGATTCAG
TTGAAGTTCAGGCCTTGGTTAGGACCAAAGGGCTTTTCTCTTTCTATGAGGATGGCCACCAAGAGTGTTGCCGTGTAAGGAAGGTTAGGC
CTTTGAGGAGAGCTCTAAAGGGCTTACGTGCCTGGATCACAGGCCAACGTAAAGATCAGTCCCCTGGAACTCGATCAGAAATCCCCATTG
TTCAGGTGGACCCTTCTTTTGAGGGGTTGGATGGCGGTGCTGGTAGCTTGGTGAAATGGAACCCCGTGGCTAATGTGGACGGAAAAGATA
TTTGGAACTTCCTGCGTGCCATGAATGTGCCTGTGAACTCATTGCATTCACAAGGATATGTATCCATTGGATGCGAACCTTGCACAAGGC
CAGTCCTACCAGGGCAACACGAGAGAGAAGGAAGATGGTGGTGGGAAGATGCCAAGGCCAAGGAGTGTGGCTTGCACAAGGGCAACATCA
AGGATGAAAGTGTAAATGGCGCTGTCCAAACAAATGGTACTGCTACCATTGCTGATATTTTTGATACCAAGGACATTGTTACTTTGAGTA
AGCCTGGAGTAGAGAACCTACTAAAATTGGAAGACCGAAGAGAGCCTTGGCTCGTTGTTCTTTATGCACCTTGGTGCCAATTTTGCCAGG
CAATGGAAGGATCCTATGTTGAATTGGCTGAGAAGTTGGCTGGTTCTGGTGTGAAAGTGGGGAAATTTAGGGCAGATGGTGACCAGAAAG
CATTTGCACAACAGGAATTGCAGCTTGGCAGCTTCCCTACAGTACTCTTCTTCCCAAAGCACTCTTCAAAGGCCATTAAGTACCCTTCAG
AGAAGAGGGATGTAGACTCCTTGCTGGCTTTTGTGAATGCTCTCAGATGAAAAGCAAATGGTGTTTGATCAATCACCATTGTTTTGACAA
AGAAGTAATACAAGAGGGAGATATGGGGGAGTTGTAGAATATAGTGAAGAATGGTGGCAAAGTGCACCTTCCTCTTTGTGCTTTCTAAGT
TTCTTCTTGTATAGTGTTTTTGGTATATGGTTGCTCTCCCTTCTCCTCCTCTTCATTTTATTTTCCTTAGGTCCTACTTAAGACAAATAA
GTTTTTTACTTAACCATCATTCTCAAGTAAAGAAGTATATATGTCTGAGGGCTCAATTTTGTTGGTTGAAGCAAGAAGGTTTACTTTCTC
TCATTCCTAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
apsr1	APS reductase	APS reductase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 8 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	23567	APS_reduc Thiored Thioredox_dom2 Disulph_isom cysH PAPS_reduct Disulphide_isom	12
5	57643	APS_reduc Thiored Thioredox_dom2 Disulph_isom cysH PAPS_reduct Disulphide_isom	12
1.1	101384	Thioredoxin-like fold	404
2	119803	Thioredoxin-independent 5&apos -adenylylsulfate reductase - Molecular Function: oxidoreductase activity acting on sulfur group of donors disulfide as acceptor (GO:0016671) - Biological Process: sulfate reduction APS pathway (GO:0019421) Phosphoadenosine phosphosulfate reductase - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity (GO:0016740) Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	12
5	130126	Thioredoxin-independent 5&apos -adenylylsulfate reductase - Molecular Function: oxidoreductase activity acting on sulfur group of donors disulfide as acceptor (GO:0016671) - Biological Process: sulfate reduction APS pathway (GO:0019421) Phosphoadenosine phosphosulfate reductase - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity (GO:0016740) Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	12

Preceding Unigenes (1)

Unigene	Build
SGN-U244073	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
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