Sol Genomics Network

Unigene SGN-U269616

Unigene Basic Information

Unigene ID:	SGN-U269616
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269616
mRNA sequence:	Length: 1402 bp

>SGN-U269616 Solanum tuberosum #4 (21 members)
AATCATTTTTCTACTAGAAACGTCTCAAATTGCCAACTGTCTCTGCTCCTCACGCCACACACGGAGAGACAAACACGCGCGGAGCTCTCT
GTATTCAGTCTCTTCTCGTCAGATCGAGTCAGCTGAAGATGCCTTCTCGCCGGCGAACGCTTTTGAAAGTCATCATCCTCGGCGACAGTG
GGGTTGGAAAGACTTCGTTGATGAATCAATATGTAAATAAGAAGTTCAGCAATCAGTACAAAGCAACTATTGGAGCTGATTTCTTGACAA
AGGAAGTGCAGTTTGAGGATCGGCTCTTTACTCTACAGATTTGGGACACTGCTGGCCAAGAGAGATTTCAGAGTCTTGGTGTTGCTTTCT
ACCGCGGTGCTGATTGTTGTGTCCTTGTTTATGATGTAAATTCAATGAAGTCATTTGAAAACTTGAACAACTGGAGAGAAGAGTTCTTAA
TTCAGGCAAGCCCATCTGATCCAGAAAACTTTCCATTTGTCGTGCTGGGGAACAAAGTTGATGTTGATGGTGGAAATAGTAGAGTGGTGT
CTGAGAAAAAGGCTCGGGCCTGGTGCGCTTCAAAGGGTAACATTCCCTACTTTGAAACTTCAGCTAAGGAAGGAACCAACGTAGAGGAGG
CTTTCCAATGCATTGCTAAGAATGCCCTGAAGAGTGGAGAGGAGGAAGAAATATATTTGCCCGACACCATTGATGTTGCCGCTAGCAGTC
AGCAGAGGACAGGTGGATGTGAGTGTTAAACAGTTAACAATTTTCGAAGTGATGATAAACCTTGCAGCTCCAAAAAAAATTGGATTCCTT
TAGCCCTCGCTTTATTGTTTGCTTCTCATGGTCTTCTTTTCCTGGTAAATTCTCAAGTTGTACCTGTATATGCTTTTGCACGGGGATCTT
GGTGGTTTCTTGGTGCTTGAATTCTATTGGTGCTACTTTCACTTTGATAAAACTTCAAGATTTGTTGCATTCGTATTCACCTCTCTGGTG
AAAGCTCTTGCTTTACAATAATCTTTTCAGTTGATCTGTTTTACCTCACAAACCATGTGCTTCAGATACCCCTATATGTTGTACAAATGA
TGAAAATTGTAAGGCGTTTGAACAAAAAAAAAAAAAAAAAACGGGACCCAAAGTATTGGGAAGATGCGGAAAGCTTTATACCTGAGAGAT
TCGAGCAGAGCTCTGTGGATTTCATGGGGAATAACTTTGAGTTTCTTCCTTTCGGTGCCGGAAGGAGAATGTGTCCTGCGAATTACATTT
GGTTTGATCAATGTTCATCTTCCACTAGCCAAATTGCTCTATCATTTGGATTGGAAATTGCCTGATGGTCAGAAGTCAGAGGATATGGAC
CTGACTGAGGTTCTGGAATAACTGCAGCAAGAAAGAGTTGAGCTTTACTTGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ222491	DQ222491

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	21981	Ras_trnsfrmng	310
5	56261	Ras_trnsfrmng	245
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118418	Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	280
5	128935	Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) Ras small GTPase Rab type - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) - Biological Process: protein transport (GO:0015031)	203

Preceding Unigenes (1)

Unigene	Build
SGN-U245152	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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