Sol Genomics Network

Unigene SGN-U269723

Unigene Basic Information

Unigene ID:	SGN-U269723
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269723
mRNA sequence:	Length: 1969 bp

>SGN-U269723 Solanum tuberosum #4 (28 members)
CCTCCCCCACTCCTACCCCCACTCTGGTTCGAGAACCCATTCTTTCTTCTTTTAAAATCCTTCTATTTCCACTCTGTTTTTCTTATTATA
GCAAATTGCAGTGCAACATAAAGTAAAGTAGAAAAAAATGTTGCCGCTAAAATTCGCCATAGCGGTGTTTTTAGTGGTATTAATTGGGAA
TTCTATTGTAGCAGAAGATCCTTATAGATACTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAGGGTAT
TCTGATTAATGGCCAATTTCCCGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTAGATGAACC
TTTTCTACTTTCCTGGAACGGAGTACAGAACAGGAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAG
AAATAACACATTCAATCTACAAGTGAAGGATCAAATTGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTT
TGGAGGGATTAGGATTCTCAGCAGACCTAGAATCCCCGTCCCTTTCCCGGACCCTGCAAACGATTACACGATTCTCATTGGAGATTGGTA
CAAAAAGAACCACACGGACTTGAAAACAATTCTTGATGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAACGGTCGTGGTCC
TAATGGTGTTACATTCACAGTCGAGCAAGGGAAAACTTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGT
TGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTTCATGTTGGGCAATC
CTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCACTACATTGTTGTTTCATCTCGTTTTACGACTCCAGTCCTCACCACCAC
TGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCA
GGCCCGCTCCATCAGGACAAACTTGTCAGCAAGTGGACCACGGCCAAACCCACAAGGTTCATACCATTATGGTATGATCAACACAACTAA
AACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCC
TCTAAAGCTACTCGACTACTTCAAGATTGGTGGATTCAGAGTTGGAAGCATACAGGATTCCCCAACCGGTGGAGGAATTTACCAAGACAC
GTCTGTTCTAGGTGTTGATTACAGGCAATTCGTTGAGATTATATTCGAGAACAATGAGGACATCGTTCAGAGCTGGCATCTTGATGGCTA
CTCTTTTTGGGTTGTAGGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGGATGGATACAACCTTCGTGATGCGGTTTCACGTTGCAC
AGCTCAGGTGTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTAAGGACTGAATTCTGGGCACG
ACAGTACCTCGGACAACAACTATACGTGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCT
TTGTGGCAAGGTGGCTGACCGGCACACACGACCACTTTAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTT
GTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTATTACTACTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCA
ATTCCACGAAAACATTATATTTGGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGGTGCATTTTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	10
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	4

mRNA member sequences (28)

Alignment image suppressed for unigene with 28 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	69	Cu-oxidase CopA	171
2	22032	Cu-oxidase CopA	115
5	56295	Cu-oxidase CopA	109
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

Preceding Unigenes (1)

Unigene	Build
SGN-U244111	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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