Sol Genomics Network

Unigene SGN-U269743

Unigene Basic Information

Unigene ID:	SGN-U269743
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269743
mRNA sequence:	Length: 2948 bp

>SGN-U269743 Solanum tuberosum #4 (29 members)
CAAAAACTCAAAGTTTCTGGTTTCTACTCAGAGGCTGAGCTTGCTTCCATGATTTTCCTCTCTTCGGGGACCCATTTTTCACCAAACGTT
TTTGACATTGACCTCCATTGTCGTTACTTCTTGGTTTCTCTTTCAATATTGCTTCACAATCCCTAATTCTCTGTACTACTCTATCTCAAT
TGGGTTTTCTTTACTTGTCAATTATCTCTACTGGGTCGGCTTCTATTTCCACTAGGTCACTCTGGTTCTTGAAATCTTGGATTCCTATTA
TCCCTGTGAACTTCATCTTTTGTGATTTCTACTGTAATGGAGAATTCCATTCTTCTTCATAGTGGAAATCAGTTCCACCCCAACTTACCC
CTTTTAGCACTTAGGCCCAAAAAATTATCTCTAATTCATGGCTCCAGTAGAGAGCAAATGTGGAGGATCAAGCGCGTTAAAGCAACAGGT
GAAAATTCTGGGGAAGCTGCAAGTGCTGATGAATCGAATGATGCCTTACAGGTTACAATTGAAAAGAGCAAAAAGGTTTTAGCCATGCAA
CAGGACCTACTTCAACAGATTGCAGAAAGAAGAAAAGTAGTCTCTTCAATAAAAAGCAGTCTTGCCAATGCCAAAGGTACTTATGATGGT
GGGAGTGGTAGCTTATCAGATGTTGATATCCCTGACGTGGATAAAGATTATAATGTTACTGTACCTAGTACTGCTGCTACTCCAATTACT
GATGTCGATAAAAATACACCGCCTGCTATAAGCCAAGATTTTGTTGAAAGTAAAAGAGAAATCAAAAGGGACCTGGCCGATGAAAGGGCA
CCCCCACTGTCGAGATCATCTATCACAGCCAGTAGCCAGATTTCCTCTACTGTAAGTTCCAAAAGAACGTTGAATGTCCCTCCAGAAACT
CCGAAGTCCAGTCAAGAGACACTTTTGGATGTGAATTCACGCAAAAGTTTAGTAGATGTTCCTGGAAAGAAGATCCAGTCTTATATGCCT
TCATTACGTAAAGAATCCTCAGCATCCCATGTGGAACAGAGGAATGAAAATCTTGAAGGATCAAGTGCTGAGGCAAACGAAGAGACTGAA
GATCCTGTGAATATAGATGAGAAACCCCCTCCATTGGCAGGAACAAATGTTATGAACATTATTTTGGTGGCTTCAGAATGCGCTCCATGG
TCTAAAACAGGTGGGCTTGGAGATGTTGCTGGAGCATTACCCAAAGCTTTGGCTCGACGTGGCCACAGAGTTATGGTTGTGGCACCTCGT
TATGACAACTATCCTGAACCTCAAGATTCTGGTGTAAGAAAAATTTATAAAGTTGATGGTCAGGATGTGGAAGTGACTTACTTCCAAGCT
TTTATTGATGGTGTGGATTTTGTTTTCATTGACAGTCATATGTTTAGACACATTGGGAACAACATTTACGGAGGGAACCGTGTGGATATT
TTAAAACGCATGGTTTTATTTTGCAAAGCAGCGATTGAGGTTCCTTGGCATGTTCCATGTGGTGGGGTCTGCTATGGAGATGGAAATTTA
GTGTTCATTGCTAATGATTGGCATACTGCTTTATTGCCAGTATATCTGAAAGCTTATTATCGTGACAATGGAATTATGAACTATACAAGA
TCTGTCCTGGTGATTCATAACATCGCTCATCAGGGTCGTGGTCCTTTGGAGGATTTTTCATATGTAGATCTTCCACCACACTATATGGAC
CCTTTCAAGTTGTATGACCCAGTAGGAGGTGAGCATTTCAACATTTTTGCGGCTGGTCTAAAGACAGCAGATCGTGTAGTTACAGTTAGT
CATGGATATTCATGGGAACTAAAGACTTCCCAAGGTGGTTGGGGATTGCATCAGATAATTAATGAGAACGATTGGAAATTACAGGGTATT
GTGAATGGGATTGATACAAAAGAGTGGAACCCTGAGTTGGACGTTCACTTACAGTCAGATGGTTACATGAACTACTCCTTGGACACGCTA
CAGACTGGCAAGCCTCAATGTAAAGCTGCATTGCAGAAGGAACTTGGTTTACCAGTTCGTGATGATGTCCCACTGATCGGTTTCATTGGG
AGGCTTGACCCACAAAAGGGTGTTGATCTGATTGCTGAGGCAGTGCCTTGGATGATGGGTCAGGATGTACAACTGGTCATGTTGGGGACG
GGGAGGCGTGACCTTGAACAGATGCTAAGGCAATTTGAGTGTCAACACAATGATAAAATTAGAGGATGGGTTGGTTTCTCTGTGAAGACT
TCTCATCGTATAACTGCTGGTGCAGACATTCTGCTCATGCCTTCTAGATTTGAGCCTTGCGGACTGAACCAGCTTTATGCAATGAAATAT
GGGACTATTCCTGTTGTTCATGCAGTAGGAGGACTCAGAGATACTGTGCAGCCCTTTGATCCTTTTAATGAGTCAGGACTGGGGTGGACC
TTCAGTAGGGCTGAAGCTAGCCAGCTGATCCACGCATTAGGAAATTGCTTACTGACTTATCGTGAGTACAAAAAGAGTTGGGAGGGGATT
CAGACACGTTGTATGACACAAGACTTAAGTTGGGATAATGCTGCTCAGAACTATGAAGAAGTTCTCATCGCTGCTAAGTATCAGTGGTGA
GGTTCATTACTTGTAGATATTTGGGGATTTTGGCCATTGTATCAAGTTCTAATGATGGGATTTCAGAGACATGTTTCTGGTATCGACACG
AGAGGATGCATGCAACAAGTTGGCTAACTATCATACTACTACCACGTCAGGAATGATTGCCGCACTTGATCATGTAATCATGTATATACT
CTATTTTGTTTGCAAAATGTAGTTACATGTTGCAATTTCTACTCTATATTTGTTGAAAGTTTTAGTGTCAAATAATCAGCGACCTCAATT
TTAATTTCCAGATGTATTCTCTCTGGTAAGTTAGGCTCATGACATTGCACTTGTAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ss2	soluble starch synthase	soluble starch synthase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	7
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P211593 (776 Aa)

TSSFVISTVMENSILLHSGNQFHPNLPLLALRPKKLSLIHGSSREQMWRIKRVKATGENSGEAASADESNDALQVTIEKSKKVLAMQQDL
LQQIAERRKVVSSIKSSLANAKGTYDGGSGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAPPL
SRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSYMPSLRKESSASHVEQRNENLEGSSAEANEETEDPV
NIDEKPPPLAGTNVMNIILVASECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEVTYFQAFID
GVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVL
VIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQGGWGLHQIINENDWKLQGIVNG
IDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRR
DLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFSR
AEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW

SignalP predicts non-secretion with a score of 0.076

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P72763 (867 Aa)

QKLKVSGFYSEAELASMIFLSSGTLFHQTFLTLTSIVVLLGFSFNIASQSLILCTTLSQLGFLYLSIISTGSASISTRSLWFLKSWIPII
PVNFIFCDFYCNGEFHSSSSGNQFHPNLPLLALRPKKLSLIHGSSREQMWRIKRVKATGENSGEAASADESNDALQVTIEKSKKVLAMQQ
DLLQQIAERRKVVSSIKSSLANAKGTYDGGSGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAP
PLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSYMPSLRKESSASHVEQRNENLEGSSAEANEETED
PVNIDEKPPPLAGTNVMNIILVASECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEVTYFQAF
IDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRS
VLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQGGWGLHQIINENDWKLQGIV
NGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTG
RRDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQPFDPFNESGWGGPS
VGLKQPADPRIRKLLTAYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW

SignalP predicts non-secretion with a score of 0.295

IPR001296 Glycosyl transferase, group 1

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	351	Glyco_trans_1	47
2	22380	Glyco_trans_1	32
5	57830	Glyco_trans_1 HPr_SerP_S	11
1.1	101669	Starch synthase catalytic region	48
2	119071	Starch synthase catalytic region Glycosyl transferase group 1 - Biological Process: biosynthesis (GO:0009058) Glycogen/starch synthases ADP-glucose type - Molecular Function: starch synthase activity (GO:0009011) - Biological Process: glucan biosynthesis (GO:0009250)	21
5	130479	Starch synthase catalytic region Glycosyl transferase group 1 - Biological Process: biosynthesis (GO:0009058) Glycogen/starch synthases ADP-glucose type - Molecular Function: starch synthase activity (GO:0009011) - Biological Process: glucan biosynthesis (GO:0009250)	10

Preceding Unigenes (3)

Unigene	Build
SGN-U244904	Solanum tuberosum #3
SGN-U251170	Solanum tuberosum #3
SGN-U255639	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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