Sol Genomics Network

Unigene SGN-U269752

Unigene Basic Information

Unigene ID:	SGN-U269752
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269752
mRNA sequence:	Length: 1551 bp

>SGN-U269752 Solanum tuberosum #4 (22 members)
GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGT
GGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGC
CTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATC
TTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAGGCCGAAGATAGGACAAAAGAAGCTCACACTTTTGGTATATCCAAAGATGAGCT
CTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGC
ATCGAGGATATTCCATACTGCTTTGGAGGAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATC
GCAAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGT
TTACTATTGCAACAGGGCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCC
CAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGC
ATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAA
TGACCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATT
TGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGG
TCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGGTTTTGGTGA
ACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCAGGATAACAT
GAATGGAAGGTCAACACCAAATTGAGGCATTTATGTTAGTGAGCCTCATTCTCGAGTTGATTAACATCTCAGTCCTTTTTACTTGTTGCT
TTTTTGGTTAACTGCACTCTTGCATTTGAATTGATCATCTTTCCCTCAACTTGATTTGTACATTAAAGATCTAAAACTCAGGTTTGCAGT
GTAATCTTAGGTGCTTTGCTGATGCTTCTGTTTTTGTAATCTCATATAGAGGATTATATTGACAGAAAATATAGTTTTCAAAAAGTTACA
GAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	30	TPR	292
2	24470	TPR	8
5	58505	TPR	8
1.1	101370	Jacalin-related lectin	591
2	121801	Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	6
5	132013	Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	6

Preceding Unigenes (1)

Unigene	Build
SGN-U244383	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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