Sol Genomics Network

Unigene SGN-U269787

Unigene Basic Information

Unigene ID:	SGN-U269787
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269787
mRNA sequence:	Length: 1074 bp

>SGN-U269787 Solanum tuberosum #4 (29 members)
GTTCATATTATTCTTCTTCTCAAAAAAACAAAAACAAAAAAAGAGGAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAAT
TAGCACTTCAGCTGAGGCTGCAAGACAAATTCTTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGC
TTCCACTCCACCAGTCAAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAGCAAAGCCTTTCATACTTAGATGGAAGTCTTCCCGG
TGACTTTGGCTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCAT
CAATGGTCGGTTCGCCATGTTAGGAGCAGTAGGGTCAATAGCACCAGAGATTCTTGGTAAAGCTGGTCTCATCCCACAAGAAACAGCACT
TGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAACTACACATTGTTTGTCCTTGAAATGGCACT
CATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCCGGTTCAATGGGGAAACAATACTTCTTAGGCCTAGAAAAGGGTTT
GGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGGAAAGATGATAAGTCCATGAAGGAATTGAA
GCTTAAGGAGATTAAGAATGGAAGACTTGCTATGTTGGCTATTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCA
AAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTCCACTAGAGCAAAGCAATCCACTCTTTCTT
CCAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGG
ACATGTCATTTTAAAAGGCCTGATATATATTTTTAGAGGAAATCATCTAGTATTTTGTTCTCACTGATTCGACTAATTCAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Llhca3st1	apoprotein 2

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	6
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	57	Chloro_ABbind	219
2	21999	Chloro_ABbind	201
5	56277	Chloro_ABbind	163
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	128943	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	163

Preceding Unigenes (1)

Unigene	Build
SGN-U244292	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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