Sol Genomics Network

Unigene SGN-U269837

Unigene Basic Information

Unigene ID:	SGN-U269837
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269837
mRNA sequence:	Length: 1396 bp

>SGN-U269837 Solanum tuberosum #4 (16 members)
GGTAAATAGCCTTTTCTGCCCCATATATTAAAGGTGGACTTACAAGTCCAACAAGTGTTCCCTGTGGTACAACTACAAACAGCAGTTACT
CCGTCTCCGCCAGTACCGCCGGCAGCTTTTCATCTCCGATCCTCCGGTTCACGACGGCGATATCCTTCTCTTGTCATACTCAAGAGTCCA
TCCAGTTTGACCTAAGATGGACCAGTATGAAAAAGTTGAAAAGATTGGTGAAGGAACGTATGGCGTAGTGTACAAAGCTCGTGATCGTGT
AACTAATGAAACTATTGCACTGAAGAAAATTCGGCTGGAGCAGGAAGATGAGGGTGTGCCAAGCACGGCTATTAGAGAAATCTCCCTCTT
GAAAGAGATGCAGCATGGAAACATTGTGAGGTTGCAAGATGTGGTTCACAGTGAGAAGCGATTATATCTAGTGTTTGAATATCTCGACTT
GGATTTGAAGAAGCATATGGACTCATGTCCAGAGTTCTCTAAGGATCCGCGTCTTGTAAAAATGTTTTTGTATCAAATTCTCCGTGGAAT
TGCTTATTGTCATTCTCATAGAGTTCTTCACCGAGATCTGAAGCCTCAGAACTTGCTGATAGATAGACGTACAAATGTTCTAAAGCTTGC
AGACTTTGGATTGGCTAGAGCATTCGGCATTCCTGTCAGAACTTTCACTCATGAGGTGGTGACCTTATGGTACAGGGCACCAGAAATACT
GCTAGGATCACGCCACTACTCTACTCCTGTTGATGTTTGGTCAGTTGGCTGCATATTTGCTGAGATGGTGAACCAGCGGCCTTTGTTTCC
GGGTGACTCCGAGATTGACGAACTTTTCAAGATTTTCAGAGTTGTGGGTACTCCAACTGAGGATACATGGCCTGGAGTGACTTCTCTGCC
TGATTTTAAATCTGCTTTTCCAAAATGGCCATCTAAGGACTTGGCAACTGTAGTCCCTAATCTTGGTGCAGCAGGCCTTGATCTCATTGG
TAAAATGCTTTGCCTAGACCCCAGCAAGAGAATCACTGCCCGAAGTGCCCTTGAGCATGAGTACTTCAAGGATATTGGGTTCGTTCCATG
ATTCGTGGCACCTGTTCTAATGTAAAAGAAATTTGGATTTCTTTGCACCTGCATCTTGAGTTCTAATGTAAATTTGAGTGTGTTATCTAC
AAGGTTTTCTTCTTAGGAAGTTGTGCAATCTTTAGGCTTTGTCTGTACTCTACTTTTAATTATATTTCCTCCAATGCTATCCAATCTGTT
CACAATTCACGCTAAATGTTTGAAGATAGTTTCACTGCAATTTCCTTTGGCTTTGTATTTTGTGGTTCAGACCATACTGGAAGACAGCAA
TCCATACTGCTTTCTTGCATTAATTTTATTTTGGGGTTCCATTGAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
STU53510	cdc2-like p34 kinase gene	protein kinase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2	Prot_kinase	1610
2	21980	Prot_kinase	311
5	56279	Prot_kinase	147
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	128957	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	116

Preceding Unigenes (1)

Unigene	Build
SGN-U244657	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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