Sol Genomics Network

Unigene SGN-U269856

Unigene Basic Information

Unigene ID:	SGN-U269856
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269856
mRNA sequence:	Length: 1897 bp

>SGN-U269856 Solanum tuberosum #4 (26 members)
CAGTGAGCTGAGAGAGAAAAGAGTGATAAAAATGGCGATTAGGGTTTGGATTTCGTTATTTCTATGTGTTTTCGCATTGTTAGGATCGGA
ATCTTACGCTTCTGAGAGCGAAGACACTCAATCCAAGGAGTTCGTTGTGACTTTGGATCACTCAAATTTCTCTGATTTTGTAGGTCGACA
CAAATTCATCGTCGTCGAGTTCTACGCCCCTTGGTGTGGTCACTGCAAGAAGCTTGTTCCAGAATATGAGAAAGCAGCACAAATTTTAAG
CCAGAATGATCCACCAGTTGTTCTGGCCAAAGTTGATGCCAGTGAGGAGCAAAACAAGGTTCTTGCCAGTGAGTTCGACATAAAAGGTTT
CCCCACTCTTAAGATCTTGAGGTATGGAGGTAGCGTTGTTCAAGATTACAAAGGACCACGTGAGGCGGATGGTATTGTTTCTTACGTGAA
GAAACAAAGTGGCCCTGCTTCTGCTGAAATAAAATCATCTAAGGATGCAGAAGATTTTATAGATGTCAATAAGATCATTATCGTTGGGGT
CTTTCCCGAGTTCTCCGGTGAGAAATTTGAGAATTTTACAGCTGTGGCTGAGAGATTACGTGCTGATTATGATTTTGGTCATACTTCGGA
TGCTAAACTCCTTCCTCGTGGGGATTCATCAGTTTCTGGCCCTGTGGTTAGGTTATTCAAGCCTTTTGATGAACTTTTTGTAGATTTTCA
GGAGTTCGATGTGGATGCCTTGGCAAAGTTAGTCGAAGAAGCAACTATTCCTACTGTGACTGTATATAACAAGGACCCCAACAACCATCC
ATTTGTTGTTAAATTCTTCAACAGTCCAAATGCCAAGGCCATGTTGTTCGTAAACTTCAACAATGACCTATTTGATAGTTTCAAATCCAA
GTATCATGAAGTTGCTGAACAGTACAAAGGCAATGATATTAGTTTCTTAATTGGTGATGTTGAGGCCAGTCAAGGTGCCTTCCAGTACTT
TGGACTCAAAGAGGATCAGACACCTCTAATCATCATACAGACAAATGATGGAGAGAAATATCTCAAACCAAATGTTGAGCCTGATCACAT
TGTGTCATGGGTTAAGGATTTTAAGGACGGCAAGGTGAAACCTTTCAAAAAATCAGAACCTATCCCAGAAGTTAACAGCGAACCTGTTAA
AGTTTTGGTTGCTGACAATTTCCAGGATATGGTTTTCAACTCTGGGAAGAATGTACTCATCGAGTTCTATGCCCCTTGGTGTGGACACTG
CAAGCAGTTGGCCCCAATCCTTGATGAAGTGGCTGTCTCATTCGAAAGTGATGCAGATGTTATGATTGCCAAAATTGATGCTACTGCTAA
TGATATTCCACAAGGAACTTTTGAGGTCCAAGGTTATCCTACTCTTTATTTCAAGTCAGCAAGTGGAAAGCTCTTGCAGCATCAAGGTGG
GAGGACCAAGGAAGACATTATTGACTTTATCCAGGAGAATCGGGATAAGGCTGCAGAGCAAGCTCCGGGAAAAGATGAGCTATAATTAAA
GGATGAAAATGAAGGAGTCTTCTAACACAGTTGGCATTGGCGTTGGCTGCCTTACTGACTTACAAGCTCCAGCCAAGTGAGAAGAAAGAA
ACAAGCGCACAACATCTCCACCTTTGCTTACCCTCCCCCCCAGAACCCAAATATAGCCCCTGAGTCTGTAATCAAATATTTTCTGTTGAG
CAGGATTTTCCAAGGATTTAGGTATCGTAGCAAGTTTCAGTGGTTTGATTAGCTGCATCTTTGTATGTTGAATGGTTTTCTAGAGAAACT
TGTCAATTTAAAGTTATTTACGAAACATGAGCCTTTGAATCTTACTTGAATGCCTCTTGTTTTTATACCGACTTCTATTTGTTGCCTAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pdi	disulphide isomerase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	39	Thiored Thioredox_dom2	262
2	22043	Thioredoxin Thiored Thioredox_dom2 Disulph_isom	98
5	56540	Thioredoxin Thiored Thioredox_dom2 Disulph_isom Calsequestrin Disulphide_isom	33
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129257	Thioredoxin fold Endoplasmic reticulum targeting sequence Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	28

Preceding Unigenes (1)

Unigene	Build
SGN-U244692	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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