Sol Genomics Network

Unigene SGN-U269882

Unigene Basic Information

Unigene ID:	SGN-U269882
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269882
mRNA sequence:	Length: 1388 bp

>SGN-U269882 Solanum tuberosum #4 (26 members)
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGACCAAAATACGAAGGCGATAAGGCCGTCCAGGATTTTCCCAGCTTAAACCCTTTTC
TCTTCCTCCTCAGCTAATAGCTCCTCCATCCTACTAATTGACTGCATTTCTCTACCCAATTGCTATCCATGGCATCTCAAATAATTAGAG
AATGGGCCGGAATACAGCAGTTTCCAGCTGCCACTCAATCAAAGTTGCTTGAATTACTGGGAAAACTGAAGCAGGAGAATGTCAGTACTC
TGACAATTCTAGTAATGGGGAAAGGTGGTGTTGGAAAATCATCAACGGTGAACTCAATTATCGGGGAAAGAGCAGTTGCTGTTAGTGCAT
TTCAGTCAGAAACTCCCAGACCGGTGATGGTTTCGCGTTCACGAGCAGGGTTTACACTAAACATAATTGACACCCCAGGGCTAGTTGAAG
GAGGATACGTCAATGACCAGGCTCTTGATCTCATAAAGAAGTTCCTGTTGAACAAGACAATTGATGTTTTGCTATATGTGGATCGTCTGG
ATGCATATAGAGTGGATAACTTGGATAAGCAGATTGTGAAGGCTATTACTGATAGTTTTGGTAAGGAAATATGGCGCCGAGGAATTGTAG
TTCTCACTCATGCTCAGCTTTCCCCTCCTGATGGATTGACTTATGACGAATTCACGTCCCGAAGATCAGAGGCACTTTTGAAAATCGTCC
GGATGGGTGCTCGAATTAGGAAACAAGACATTCAGGCTGCTTCAATTCCTGTTGTCTTGGTTGAGAATAGTGGCAGATGTAACAAGAATG
AAAGTGACGAAAAGATTCTTCCAAGTGGAACTGCATGGATACCCAATTTAGTCCAAACTATTACAGATGCTGTTTTAAGTGGAAGCAAGG
GTATTTTGGTTGACCAGAAACTGATTGAAGGTCCAAATCCAAACAACAGGGGCAAAGTGCTAATTCCTTTTATACTAGCATTCCAGTATT
TCTTTGTAGTGAAAAGGATTCAGAAATCTATCAAGAATGATATTGCAAGGGAGAGCAGGCCTGCATGGGCATAAGCAATCACTGGAATGG
CCCTTGTTTGTCAACTCAATTCCCCTTTTGGTTCTTTGAAGGATTTTGGATTTCCTTGCCATCAGCTTATCAGTTTATACTTTTCTTGGT
TAAGTAGTTATATTTATTAGTAGCCAGAGAAACCAGTCATATGCGGCGGTAGGATTTCAACTTTGTTCTGCTGAACTTGGCGTAGCGCCT
CGGATTTATTGTGGTTGGATGCTTGATTAGTAACTGAGTTATGTAATTGTTGTTATTTGCACTTGTATTTTTCCATATGATGAAATAATT
ATATTAAGCATAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXFL	Floral buds	6603	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	7
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	266	AIG1	58
2	23359	Small_GTP MMR_HSR1 AIG1 GTP-bindding_dom DUF258 Toc34	13
5	57458	Small_GTP MMR_HSR1 AIG1 GTP-bindding_dom DUF258 Toc34	13
1.1	101460	AIG1 - Molecular Function: GTP binding (GO:0005525)	130
2	120062	Chloroplast protein import component Toc34 - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: chloroplast outer membrane (GO:0009707) - Molecular Function: protein translocase activity (GO:0015450) AIG1 - Molecular Function: GTP binding (GO:0005525)	10
5	130350	Chloroplast protein import component Toc34 - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: chloroplast outer membrane (GO:0009707) - Molecular Function: protein translocase activity (GO:0015450) AIG1 - Molecular Function: GTP binding (GO:0005525)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U244637	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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