Sol Genomics Network

Unigene SGN-U270025

Unigene Basic Information

Unigene ID:	SGN-U270025
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270025
mRNA sequence:	Length: 1445 bp

>SGN-U270025 Solanum tuberosum #4 (25 members)
AGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGA
GAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGA
GGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAA
ACCAGAACCTCCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAA
AGGATTCCAAGGAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATT
GGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAA
GAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAGCCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTG
TGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGAC
AGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGA
ACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGG
TGACAACAAAGAGGAGAAGAAGGAAGAAGCAGCCGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGT
ACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCC
ACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAAT
TTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGAC
TCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGT
TGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAAAAAAAAAAAAAAAAAAAAA
AAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	5
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	9

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	59	HeavyMe_transpt	218
2	22093	HeavyMe_transpt	71
5	56794	HeavyMe_transpt	22
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118800	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	29
5	129655	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U245266	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer