Sol Genomics Network

Unigene SGN-U270047

Unigene Basic Information

Unigene ID:	SGN-U270047
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270047
mRNA sequence:	Length: 1252 bp

>SGN-U270047 Solanum tuberosum #4 (21 members)
CCGAATGGAATCTTGATTTTGTGGAGAACTGTGAGCAGGGNAGATAGGTATCANGGAACTANGCTCACAGGGGTTTGATGAAAGCCCTTT
AAGGATTTCATTGGGCTTGCTTGCTTGGACCTTCACAGGTTGGAAACCAACCCTTAATTCCATTGTTCAACAAACTTGATTTCCTGGACC
ATTCCCACGAGTGCTTGCTTCTTCCTTATGAACAAGCACTTACAAGGGAGGATTCAACTTCTGGTCTTTTCTATGATTGTTCTGCTCACA
TGGTATGGGTTGGGGAAAGAACCAGGCAACTAGACGGTGCTCATGTCGAGTTTTTGAGAGGAGTTGCAAACCCTCTTGGCATAAAGGTGA
GTCAAAAAATGGATCCAAATGAGCTAATTAAGCTCATTGACATCCTGAACCCTGCCAATAAGCCTGGAAGAATAACTGTAATTGTTAGAA
TGGGTGCTGAGAACATGAGAGTGAAACTTTCCCACTTGGTCAGGGCAGTACGAGGAGCTGGTCAGATTGTGACATGGGTTTGTGATCCAA
TGCACGGGAATACCATCAAGGCACCATGTGGACTCAAAACCCGTGCTTTCGATTCAATCCTGGCTGAGGTCCGAGCTTTCTTCGATGTGC
ATGAGCAAGAAGGAAGCCACCCTGGTGGTATTCACCTAGAAATGACAGGGCAAAATGTGACTGAGTGCATTGGTGGATCACGAACAGTAA
CCTATGACGATTTGGGCTCTCGCTACCACACTCATTGTGACCCAAGATTGAATGCTTCTCAGTCTCTTGAACTTTCCTTCATCGTAGCTG
AGAGACTAAGAAGACGAAGAATGTCCACTCAACGTCTGTAGGCTTATCTAATTTACCTGTACTTTTTTAGTATGGATTCTTGTTCTCTTG
GTATCCAATAACTTATATATGTGGCCTCTGGCCATTTGAGCTGCTGTTTGGATCCAATGTTGAACATGTTACTAATAAACATGGCAGAGC
AACTTGCCTATGAGGTAAATAGGTTTCCTGCAGAGATCAAAGGGGAAATGAACATCAAGTAATTAGTCGATTTATCCGGTATCTGTTCTG
TTTATTTTAGTTTGGACTGTAAGTCTAGGGTATAAGGGTGTTCTTTTTCTTTCCTTGATGTATGAATGATACTTTGAGATACTGGTTTTG
CTGTTTTAGTCTAATGTGTTTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
shkb	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	6
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	560	DAHP_synth_2	32
2	22396	DAHP_synth_2	31
5	56570	DAHP_synth_2	31
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118869	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27
5	129282	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27

Preceding Unigenes (1)

Unigene	Build
SGN-U245385	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer